# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj12172.fasta.nr -Q fj12172.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj12172, 546 aa vs /cdna2/lib/nr/nr library 3020366983 residues in 8842601 sequences statistics sampled from 60000 to 8800340 sequences Expectation_n fit: rho(ln(x))= 6.8804+/-0.000221; mu= 5.3854+/- 0.012 mean_var=206.9288+/-39.632, 0's: 33 Z-trim: 139 B-trim: 228 in 1/65 Lambda= 0.089159 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8842601) gi|152031604|sp|P55316.2|FOXG1_HUMAN RecName: Full ( 489) 3454 457.0 6.5e-126 gi|118574788|sp|Q1A1A5.1|FOXG1_CERPY RecName: Full ( 489) 3446 455.9 1.3e-125 gi|118574787|sp|Q1A1A6.1|FOXG1_CEBCA RecName: Full ( 489) 3444 455.7 1.6e-125 gi|29477086|gb|AAH50072.1| Forkhead box G1 [Homo s ( 489) 3429 453.8 6e-125 gi|119913893|ref|XP_001249413.1| PREDICTED: simila ( 490) 3381 447.6 4.4e-123 gi|118574791|sp|Q1A1A2.1|FOXG1_EQUBU RecName: Full ( 488) 3379 447.3 5.2e-123 gi|118574789|sp|Q1A1A1.1|FOXG1_CERSI RecName: Full ( 486) 3360 444.9 2.8e-122 gi|118574790|sp|Q1A1A3.1|FOXG1_EPOGA RecName: Full ( 485) 3339 442.2 1.8e-121 gi|118574792|sp|Q1A1A4.1|FOXG1_PIPRU RecName: Full ( 484) 3316 439.2 1.4e-120 gi|2494483|sp|Q60987.1|FOXG1_MOUSE RecName: Full=F ( 481) 3234 428.7 2.1e-117 gi|148704849|gb|EDL36796.1| mCG5477 [Mus musculus] ( 458) 3077 408.4 2.5e-111 gi|399109|sp|Q00939.1|FOXG1_RAT RecName: Full=Fork ( 480) 2955 392.8 1.3e-106 gi|126282038|ref|XP_001364896.1| PREDICTED: simila ( 503) 2833 377.1 7.3e-102 gi|126282041|ref|XP_001364965.1| PREDICTED: simila ( 476) 2684 357.9 4.2e-96 gi|516381|emb|CAA52239.1| transcription factor [Ho ( 477) 2550 340.7 6.4e-91 gi|87622882|gb|ABD38850.1| forkhead box G1 [Crocod ( 462) 2442 326.8 9.6e-87 gi|1082850|pir||A54743 transcription factor HFK1 - ( 476) 2396 320.9 5.9e-85 gi|87622886|gb|ABD38852.1| forkhead box G1 [Agama ( 469) 2392 320.3 8.4e-85 gi|87622884|gb|ABD38851.1| forkhead box G1 [Psammo ( 462) 2361 316.3 1.3e-83 gi|3023381|sp|Q90964.1|FOXG1_CHICK RecName: Full=F ( 451) 2288 306.9 8.7e-81 gi|516383|emb|CAA52240.1| transcription factor [Ho ( 469) 2208 296.7 1.1e-77 gi|166796864|gb|AAI59145.1| Foxg1 protein [Xenopus ( 432) 2200 295.6 2.2e-77 gi|82249050|sp|Q9YHC5.1|FOXG1_XENLA RecName: Full= ( 436) 2155 289.8 1.2e-75 gi|3171241|gb|AAC18393.1| transcription factor BF- ( 420) 2089 281.3 4.2e-73 gi|62203301|gb|AAH92710.1| Forkhead box G1 [Danio ( 420) 2089 281.3 4.2e-73 gi|149051192|gb|EDM03365.1| rCG62338 [Rattus norve ( 299) 2020 272.2 1.6e-70 gi|3024490|sp|P56260.1|QIN_AVIS3 RecName: Full=Tra ( 387) 1808 245.1 3e-62 gi|11178689|gb|AAG32544.2| transcription factor Qi ( 395) 1808 245.1 3.1e-62 gi|476976|pir||A47446 HNF-3/fork head family trans ( 387) 1801 244.2 5.7e-62 gi|194207257|ref|XP_001914943.1| PREDICTED: simila ( 416) 1693 230.4 9e-58 gi|109083193|ref|XP_001106922.1| PREDICTED: simila ( 397) 1671 227.5 6.2e-57 gi|55846698|gb|AAV67353.1| forkhead box G1B [Macac ( 238) 1601 218.2 2.3e-54 gi|73962854|ref|XP_547758.2| PREDICTED: similar to ( 234) 1553 212.0 1.7e-52 gi|226441728|gb|ACO57466.1| forkhead box G1 [Oryzi ( 348) 1518 207.8 4.8e-51 gi|47207966|emb|CAF93027.1| unnamed protein produc ( 310) 1502 205.6 1.9e-50 gi|939887|emb|CAA52241.1| HBF-3 [Homo sapiens] ( 224) 1442 197.7 3.2e-48 gi|158262598|gb|AAI54395.1| Unknown (protein for I ( 206) 1375 189.1 1.2e-45 gi|26335067|dbj|BAC31234.1| unnamed protein produc ( 325) 1298 179.4 1.5e-42 gi|125859033|gb|AAI29658.1| LOC100037201 protein [ ( 317) 1297 179.3 1.6e-42 gi|90080994|dbj|BAE89977.1| unnamed protein produc ( 151) 1002 140.9 2.8e-31 gi|169145931|emb|CAQ13817.1| novel protein similar ( 379) 937 133.1 1.6e-28 gi|94733477|emb|CAK04395.1| novel fork head domain ( 379) 932 132.4 2.5e-28 gi|32307809|gb|AAP79301.1| brain factor 1 [Saccogl ( 356) 917 130.5 9.2e-28 gi|189531850|ref|XP_001921757.1| PREDICTED: simila ( 609) 900 128.6 5.8e-27 gi|226441730|gb|ACO57467.1| forkhead box G2 [Oryzi ( 387) 884 126.3 1.8e-26 gi|45709947|gb|AAH67725.1| Zgc:85969 [Danio rerio] ( 333) 878 125.4 2.8e-26 gi|166796366|gb|AAI59266.1| Zgc:175247 protein [Da ( 316) 853 122.2 2.6e-25 gi|47209554|emb|CAF89990.1| unnamed protein produc ( 187) 846 121.0 3.5e-25 gi|229295594|gb|EEN66240.1| hypothetical protein B ( 402) 832 119.6 1.9e-24 gi|3171239|gb|AAC18392.1| transcription factor BF- ( 402) 832 119.6 1.9e-24 >>gi|152031604|sp|P55316.2|FOXG1_HUMAN RecName: Full=For (489 aa) initn: 3454 init1: 3454 opt: 3454 Z-score: 2417.7 bits: 457.0 E(): 6.5e-126 Smith-Waterman score: 3454; 100.000% identity (100.000% similar) in 489 aa overlap (58-546:1-489) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|152 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA 40 50 60 70 80 90 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG 100 110 120 130 140 150 210 220 230 240 250 260 fj1217 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF 160 170 180 190 200 210 270 280 290 300 310 320 fj1217 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT 220 230 240 250 260 270 330 340 350 360 370 380 fj1217 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT 280 290 300 310 320 330 390 400 410 420 430 440 fj1217 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC 340 350 360 370 380 390 450 460 470 480 490 500 fj1217 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST 400 410 420 430 440 450 510 520 530 540 fj1217 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH ::::::::::::::::::::::::::::::::::::::: gi|152 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 460 470 480 >>gi|118574788|sp|Q1A1A5.1|FOXG1_CERPY RecName: Full=For (489 aa) initn: 3446 init1: 3446 opt: 3446 Z-score: 2412.2 bits: 455.9 E(): 1.3e-125 Smith-Waterman score: 3446; 99.796% identity (99.796% similar) in 489 aa overlap (58-546:1-489) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|118 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|118 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQPPPPPPPPAPQPPQTRGA 40 50 60 70 80 90 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG 100 110 120 130 140 150 210 220 230 240 250 260 fj1217 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF 160 170 180 190 200 210 270 280 290 300 310 320 fj1217 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT 220 230 240 250 260 270 330 340 350 360 370 380 fj1217 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT 280 290 300 310 320 330 390 400 410 420 430 440 fj1217 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC 340 350 360 370 380 390 450 460 470 480 490 500 fj1217 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST 400 410 420 430 440 450 510 520 530 540 fj1217 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH ::::::::::::::::::::::::::::::::::::::: gi|118 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 460 470 480 >>gi|118574787|sp|Q1A1A6.1|FOXG1_CEBCA RecName: Full=For (489 aa) initn: 3444 init1: 3444 opt: 3444 Z-score: 2410.8 bits: 455.7 E(): 1.6e-125 Smith-Waterman score: 3444; 99.591% identity (100.000% similar) in 489 aa overlap (58-546:1-489) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|118 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|118 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQARGA 40 50 60 70 80 90 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|118 PAADDDKGPQQLLLPPPPPPPPTAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG 100 110 120 130 140 150 210 220 230 240 250 260 fj1217 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF 160 170 180 190 200 210 270 280 290 300 310 320 fj1217 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT 220 230 240 250 260 270 330 340 350 360 370 380 fj1217 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT 280 290 300 310 320 330 390 400 410 420 430 440 fj1217 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC 340 350 360 370 380 390 450 460 470 480 490 500 fj1217 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST 400 410 420 430 440 450 510 520 530 540 fj1217 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH ::::::::::::::::::::::::::::::::::::::: gi|118 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 460 470 480 >>gi|29477086|gb|AAH50072.1| Forkhead box G1 [Homo sapie (489 aa) initn: 3429 init1: 3429 opt: 3429 Z-score: 2400.4 bits: 453.8 E(): 6e-125 Smith-Waterman score: 3429; 99.387% identity (99.591% similar) in 489 aa overlap (58-546:1-489) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|294 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA 40 50 60 70 80 90 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|294 PAADDDKGPQQLLLPPPPPPPPAAALDGAKAVGLGGKGEPGGGPGELAPVGPDEKEKGAG 100 110 120 130 140 150 210 220 230 240 250 260 fj1217 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF 160 170 180 190 200 210 270 280 290 300 310 320 fj1217 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|294 IMKNFPYYRENKQGWQNSIRHNLSLNMCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT 220 230 240 250 260 270 330 340 350 360 370 380 fj1217 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT 280 290 300 310 320 330 390 400 410 420 430 440 fj1217 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC 340 350 360 370 380 390 450 460 470 480 490 500 fj1217 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|294 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARATSSSTSPQAPST 400 410 420 430 440 450 510 520 530 540 fj1217 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH ::::::::::::::::::::::::::::::::::::::: gi|294 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 460 470 480 >>gi|119913893|ref|XP_001249413.1| PREDICTED: similar to (490 aa) initn: 2867 init1: 2867 opt: 3381 Z-score: 2367.0 bits: 447.6 E(): 4.4e-123 Smith-Waterman score: 3381; 98.577% identity (98.780% similar) in 492 aa overlap (58-546:1-490) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|119 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPP--APQPPQTR :::::::::::::::::::::::::::::::::::: :::: ::::::: ::::::.: gi|119 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPP--PQQQPPPPPPPPPQAPQPPQAR 40 50 60 70 80 150 160 170 180 190 200 fj1217 GAPAADDDKGPQQLLLPPPPPPPP-AAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEK :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|119 GAPAADDDKGPQQLLLPPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEK 90 100 110 120 130 140 210 220 230 240 250 260 fj1217 GAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGI 150 160 170 180 190 200 270 280 290 300 310 320 fj1217 YEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIG 210 220 230 240 250 260 330 340 350 360 370 380 fj1217 GTTGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GTTGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSY 270 280 290 300 310 320 390 400 410 420 430 440 fj1217 NGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAAS 330 340 350 360 370 380 450 460 470 480 490 500 fj1217 VPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQA 390 400 410 420 430 440 510 520 530 540 fj1217 PSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH :::::::::::::::::::::::::::::::::::::::::: gi|119 PSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 450 460 470 480 490 >>gi|118574791|sp|Q1A1A2.1|FOXG1_EQUBU RecName: Full=For (488 aa) initn: 2888 init1: 2888 opt: 3379 Z-score: 2365.6 bits: 447.3 E(): 5.2e-123 Smith-Waterman score: 3379; 98.571% identity (98.980% similar) in 490 aa overlap (58-546:1-488) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|118 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::::::::::::::::::: ::::: :::: :.::. gi|118 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQ--PPPPPQAPQPSQARGV 40 50 60 70 80 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPP-PPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGA :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|118 PAADDDKGPQQLLLPPPPPPQPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGA 90 100 110 120 130 140 210 220 230 240 250 260 fj1217 GAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE 150 160 170 180 190 200 270 280 290 300 310 320 fj1217 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT 210 220 230 240 250 260 330 340 350 360 370 380 fj1217 TGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNG 270 280 290 300 310 320 390 400 410 420 430 440 fj1217 TTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVP 330 340 350 360 370 380 450 460 470 480 490 500 fj1217 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPS 390 400 410 420 430 440 510 520 530 540 fj1217 TLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH :::::::::::::::::::::::::::::::::::::::: gi|118 TLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 450 460 470 480 >>gi|118574789|sp|Q1A1A1.1|FOXG1_CERSI RecName: Full=For (486 aa) initn: 2992 init1: 2992 opt: 3360 Z-score: 2352.4 bits: 444.9 E(): 2.8e-122 Smith-Waterman score: 3360; 97.955% identity (98.569% similar) in 489 aa overlap (58-546:1-486) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::. gi|118 MLDMGDRKEVKMIPKSSFSINSLVPEAVQS 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA ::::::::::::::::::::::::::::::::::::::: :: ::::::: :.::. gi|118 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPP---PPPQQPPPAPQPSQARGV 40 50 60 70 80 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG 90 100 110 120 130 140 210 220 230 240 250 260 fj1217 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF 150 160 170 180 190 200 270 280 290 300 310 320 fj1217 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT 210 220 230 240 250 260 330 340 350 360 370 380 fj1217 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT 270 280 290 300 310 320 390 400 410 420 430 440 fj1217 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC 330 340 350 360 370 380 450 460 470 480 490 500 fj1217 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST 390 400 410 420 430 440 510 520 530 540 fj1217 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH ::::::::::::::::::::::::::::::::::::::: gi|118 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 450 460 470 480 >>gi|118574790|sp|Q1A1A3.1|FOXG1_EPOGA RecName: Full=For (485 aa) initn: 2709 init1: 2709 opt: 3339 Z-score: 2337.8 bits: 442.2 E(): 1.8e-121 Smith-Waterman score: 3339; 98.367% identity (98.571% similar) in 490 aa overlap (58-546:1-485) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|118 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::: ::::::::::::::: ::::: ::::::.::: gi|118 DNHHASHGHHNSHHPQHHHHHHHHHH-PPPPAPQPPPPPQQQ--PPPPPQAPQPPQARGA 40 50 60 70 80 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGG-PGELAPVGPDEKEKGA :::::::::::::::::::: ::::::::::::::::::::: :::::::::::::::: gi|118 PAADDDKGPQQLLLPPPPPP--AAALDGAKADGLGGKGEPGGGGPGELAPVGPDEKEKGA 90 100 110 120 130 140 210 220 230 240 250 260 fj1217 GAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE 150 160 170 180 190 200 270 280 290 300 310 320 fj1217 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT 210 220 230 240 250 260 330 340 350 360 370 380 fj1217 TGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNG 270 280 290 300 310 320 390 400 410 420 430 440 fj1217 TTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVP 330 340 350 360 370 380 450 460 470 480 490 500 fj1217 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPS 390 400 410 420 430 440 510 520 530 540 fj1217 TLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH :::::::::::::::::::::::::::::::::::::::: gi|118 TLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 450 460 470 480 >>gi|118574792|sp|Q1A1A4.1|FOXG1_PIPRU RecName: Full=For (484 aa) initn: 2651 init1: 2651 opt: 3316 Z-score: 2321.9 bits: 439.2 E(): 1.4e-120 Smith-Waterman score: 3316; 97.959% identity (98.163% similar) in 490 aa overlap (58-546:1-484) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|118 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::: ::::::::::::::: :::: ::::::.::: gi|118 DNHHASHGHHNSHHPQHHHHHHHHHH-PPPPAPQPPPPPQQQ---PPPPQAPQPPQARGA 40 50 60 70 80 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGG-PGELAPVGPDEKEKGA :::::::::::::::::::: ::::::::::::::::::::: ::::::::::::::: gi|118 PAADDDKGPQQLLLPPPPPP--AAALDGAKADGLGGKGEPGGGGAGELAPVGPDEKEKGA 90 100 110 120 130 140 210 220 230 240 250 260 fj1217 GAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE 150 160 170 180 190 200 270 280 290 300 310 320 fj1217 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT 210 220 230 240 250 260 330 340 350 360 370 380 fj1217 TGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TGKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNG 270 280 290 300 310 320 390 400 410 420 430 440 fj1217 TTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 TTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVP 330 340 350 360 370 380 450 460 470 480 490 500 fj1217 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPS 390 400 410 420 430 440 510 520 530 540 fj1217 TLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH :::::::::::::::::::::::::::::::::::::::: gi|118 TLPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 450 460 470 480 >>gi|2494483|sp|Q60987.1|FOXG1_MOUSE RecName: Full=Forkh (481 aa) initn: 2699 init1: 2699 opt: 3234 Z-score: 2264.9 bits: 428.7 E(): 2.1e-117 Smith-Waterman score: 3234; 95.706% identity (97.342% similar) in 489 aa overlap (58-546:1-481) 30 40 50 60 70 80 fj1217 PRSAPTGRRRPPRRCPAPAPPPPFPPDDWVMLDMGDRKEVKMIPKSSFSINSLVPEAVQN :::::::::::::::::::::::::::::: gi|249 MLDMGDRKEVKMIPKSSFSINSLVPEAVQN 10 20 30 90 100 110 120 130 140 fj1217 DNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQTRGA :::::::::::::::::::::::::: :::::::::::: ::: ::: ::::::.::: gi|249 DNHHASHGHHNSHHPQHHHHHHHHHH-PPPPAPQPPPPPPQQQQQQPPP-APQPPQARGA 40 50 60 70 80 150 160 170 180 190 200 fj1217 PAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAG :::::::::: ::::: ..::::::::.::.::::::::.::::::::::::::: gi|249 PAADDDKGPQPLLLPP------STALDGAKADALGAKGEPGGGPAELAPVGPDEKEKGAG 90 100 110 120 130 140 210 220 230 240 250 260 fj1217 AGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|249 AGGEEKKGAGEGGKDGEGGKEGDKKNGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEF 150 160 170 180 190 200 270 280 290 300 310 320 fj1217 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 IMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGTT 210 220 230 240 250 260 330 340 350 360 370 380 fj1217 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 GKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGT 270 280 290 300 310 320 390 400 410 420 430 440 fj1217 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 TSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPC 330 340 350 360 370 380 450 460 470 480 490 500 fj1217 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSARAASSSTSPQAPST :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|249 GLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQTSTSMSARAASSSTSPQAPST 390 400 410 420 430 440 510 520 530 540 fj1217 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH ::::::::::::::::::::::::::::::::::::::: gi|249 LPCESLRPSLPSFTTGLSGGLSDYFTHQNQGSSSNPLIH 450 460 470 480 546 residues in 1 query sequences 3020366983 residues in 8842601 library sequences Tcomplib [34.26] (8 proc) start: Mon May 25 14:58:42 2009 done: Mon May 25 15:01:37 2009 Total Scan time: 1165.990 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]