hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15013808/chunk_1/iprscan-20090525-15013808.nocrc
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Query sequence: fj12172
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00250.8.ls Fork head domain                              256.0    7.2e-74   1
PF00250.8.fs Fork head domain                              235.7    9.1e-68   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00250.8.fs   1/1      19   333 ..     1   101 []   235.7  9.1e-68
PF00250.8.ls   1/1     238   333 ..     1   101 []   256.0  7.2e-74

Alignments of top-scoring domains:
PF00250.8.fs: domain 1 of 1, from 19 to 333: score 235.7, E = 9.1e-68
                   *->KPP............................................
                       PP ++ ++ +++ ++++++++++ + + ++++ ++++    + +++
     fj12172    19    -PPlppappaprsaptgrrrpprrcpapappppfppddwvmldmgdr 64   

                   ..................................................
                   ++ +  ++++ + ++  ++  ++++++ ++++++++++++++++++++++
     fj12172    65 kevkmipkssfsinslvpeavqndnhhashghhnshhpqhhhhhhhhhhh 114  

                   ..................................................
                   ++++ ++++++++++++++++++ ++++++++ +  ++++++++   +++
     fj12172   115 ppppapqpppppqqqqpppppppapqppqtrgapaadddkgpqqlllppp 164  

                   ..................................................
                   +++++    ++ + ++ ++++++++++++  + ++++++++ + ++++++
     fj12172   165 pppppaaaldgakadglggkgepgggpgelapvgpdekekgagaggeekk 214  

                   ..........................YSYiaLItmAIqqySpekrLtLse
                   + +++++++++++++++++++ +++++SY+aLI+mAI+q SpekrLtL++
     fj12172   215 gageggkdgeggkegekkngkyekppFSYNALIMMAIRQ-SPEKRLTLNG 263  

                   IYkfImdrFPYYRqnkqgWQNSIRHNLSLNkcFiKVpRspdkpGKGsyWt
                   IY+fIm++FPYYR+nkqgWQNSIRHNLSLNkcF+KVpR++d+pGKG+yW+
     fj12172   264 IYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWM 313  

                   ldPeaedmFenkkkkgsflkrrrr<-*
                   ldP++ d+F++    g+++k+rrr   
     fj12172   314 LDPSSDDVFIG----GTTGKLRRR    333  

PF00250.8.ls: domain 1 of 1, from 238 to 333: score 256.0, E = 7.2e-74
                   *->KPPYSYiaLItmAIqqySpekrLtLseIYkfImdrFPYYRqnkqgWQ
                      KPP+SY+aLI+mAI+q SpekrLtL++IY+fIm++FPYYR+nkqgWQ
     fj12172   238    KPPFSYNALIMMAIRQ-SPEKRLTLNGIYEFIMKNFPYYRENKQGWQ 283  

                   NSIRHNLSLNkcFiKVpRspdkpGKGsyWtldPeaedmFenkkkkgsflk
                   NSIRHNLSLNkcF+KVpR++d+pGKG+yW+ldP++ d+F++    g+++k
     fj12172   284 NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIG----GTTGK 329  

                   rrrr<-*
                   +rrr   
     fj12172   330 LRRR    333  

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