hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15013808/chunk_1/iprscan-20090525-15013808.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj12172
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00339                                                 224.7    8.2e-63   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00339    1/1     236   326 ..     1    99 []   224.7  8.2e-63

Alignments of top-scoring domains:
SM00339: domain 1 of 1, from 236 to 326: score 224.7, E = 8.2e-63
                   *->neKPPySYiaLIamAIlsSPekrLTLseIYkwImdnFPYYrenkasn
                      +eKPP+SY+aLI+mAI++SPekrLTL++IY++Im+nFPYYrenk+  
     fj12172   236    YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQ-- 280  

                   sagWqvNSIRHNLSLNdcFvKvprdkegdrpgKGsyWtldPdaeedmfen
                     gWq NSIRHNLSLN+cFvKvpr  + d+pgKG+yW+ldP++  d+f+ 
     fj12172   281 --GWQ-NSIRHNLSLNKCFVKVPR--HYDDPGKGNYWMLDPSSD-DVFIG 324  

                   gs<-*
                   g+   
     fj12172   325 GT    326  

//