hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-10041496/chunk_1/iprscan-20090618-10041496.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj12189 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 290.7 2.5e-84 6 PF00028.8.ls Cadherin domain 275.6 9.3e-80 5 PF08266.2.fs Cadherin-like 21.8 8.2e-06 3 PF08266.2.ls Cadherin-like -9.7 0.00013 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 49 169 .. 1 84 [] -9.7 0.00013 PF00028.8.fs 1/6 197 294 .. 1 107 [] 40.2 6.8e-11 PF00028.8.ls 1/5 197 294 .. 1 107 [] 42.0 1.9e-09 PF00028.8.fs 2/6 308 365 .. 1 61 [. 42.2 1.7e-11 PF00028.8.ls 2/5 308 400 .. 1 107 [] 27.1 5.6e-05 PF00028.8.fs 4/6 523 613 .. 1 107 [] 74.5 9.9e-21 PF00028.8.ls 3/5 523 613 .. 1 107 [] 76.3 9e-20 PF00028.8.ls 4/5 627 716 .. 1 107 [] 79.8 8.1e-21 PF00028.8.fs 5/6 627 716 .. 1 107 [] 77.9 9.8e-22 PF00028.8.fs 6/6 734 827 .. 1 107 [] 48.6 2.6e-13 PF00028.8.ls 5/5 734 827 .. 1 107 [] 50.4 5.7e-12 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 49 to 169: score -9.7, E = 0.00013 *->gqirYSVpEEterGsfVGNlAKDLGLdvqe.........LaaR.... + YS E ++ G +G lA DL L ++ ++++++++L++R++ + fj12189 49 TELLYSLNEGLPAGVLIGSLAEDLRLLPRSagrpdpqsqLPERtgae 95 .....gaRivSgg.nkqyFqlnletGdLlvn.ERiDREeLC......... +++ + ++S+g + qy l+ ++G+L+++ iDRE+LC ++++++ fj12189 96 wnpplSFSLASRGlSGQYVTLDNRSGELHTSaQEIDREALCveggggtaw 145 ........gqsepCvLhlevllEn<-* +++ + ++ +s++C+L l+vl+ fj12189 146 sgsvsissSPSDSCLLLLDVLVLP 169 PF00028.8.fs: domain 1 of 6, from 197 to 294: score 40.2, E = 6.8e-11 *->ysasvpEnapvGtevltvt.AtDaDdPlgpNgrirYsilggnpggwF s+ vpEnapv+t+++ ++A+D+D g Ng +Y++l + g+F fj12189 197 ISVWVPENAPVNTRLAIEHpAVDPD--VGINGVQTYRLLDYH--GMF 239 rIdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasggg ++d + ++n ++ + ++ LDRE++ ++Y+ +++A D+ g+ fj12189 240 TLDVEENENGERtpyLIVMGALDRETQ--DQYVSIIIAEDG-------GS 280 pplsstatvtitVl<-* ppl + at+ti + fj12189 281 PPLLGSATLTIGIS 294 PF00028.8.ls: domain 1 of 5, from 197 to 294: score 42.0, E = 1.9e-09 *->ysasvpEnapvGtevltvt.AtDaDdPlgpNgrirYsilggnpggwF s+ vpEnapv+t+++ ++A+D+D g Ng +Y++l + g+F fj12189 197 ISVWVPENAPVNTRLAIEHpAVDPD--VGINGVQTYRLLDYH--GMF 239 rIdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasggg ++d + ++n ++ + ++ LDRE++ ++Y+ +++A D+ g+ fj12189 240 TLDVEENENGERtpyLIVMGALDRETQ--DQYVSIIIAEDG-------GS 280 pplsstatvtitVl<-* ppl + at+ti + fj12189 281 PPLLGSATLTIGIS 294 PF00028.8.fs: domain 2 of 6, from 308 to 365: score 42.2, E = 1.7e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg +++v na vGt+++ v+A+D+D lg+N++i+Ys ++ p+ +++ fj12189 308 INVTVYGNATVGTPIAAVQAVDKD--LGTNAQITYSYSQKVPqasKD 352 wFrIdpdtGdnegiist<-* F++d++tG+ i++ fj12189 353 LFHLDENTGV----IKL 365 PF00028.8.ls: domain 2 of 5, from 308 to 400: score 27.1, E = 5.6e-05 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg +++v na vGt+++ v+A+D+D lg+N++i+Ys ++ p+ +++ fj12189 308 INVTVYGNATVGTPIAAVQAVDKD--LGTNAQITYSYSQKVPqasKD 352 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F++d++tG+ i++ + + + Lt++A + g+ fj12189 353 LFHLDENTGV----IKLFSKIGGSVL--ESHKLTILA--N-------GPG 387 plsstatvtitVl<-* ++ t ++++ fj12189 388 CIPAVITALVSII 400 PF00028.8.fs: domain 4 of 6, from 523 to 613: score 74.5, E = 9.9e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +++En +++ +++ + AtDaD + g+++Y++ ++ + F+ fj12189 523 IELTIEENNSPNAFLTKLYATDAD--SEERGQVSYFLGPDA-PSYFS 566 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d+ tG +++ +LDREe ++Y+ tv+A+D+ g pp++ fj12189 567 LDSVTGI----LTVSTQLDREEK--EKYRYTVRAVDC-------GKPPRE 603 statvtitVl<-* s+atv tVl fj12189 604 SVATVALTVL 613 PF00028.8.ls: domain 3 of 5, from 523 to 613: score 76.3, E = 9e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +++En +++ +++ + AtDaD + g+++Y++ ++ + F+ fj12189 523 IELTIEENNSPNAFLTKLYATDAD--SEERGQVSYFLGPDA-PSYFS 566 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d+ tG +++ +LDREe ++Y+ tv+A+D+ g pp++ fj12189 567 LDSVTGI----LTVSTQLDREEK--EKYRYTVRAVDC-------GKPPRE 603 statvtitVl<-* s+atv tVl fj12189 604 SVATVALTVL 613 PF00028.8.ls: domain 4 of 5, from 627 to 716: score 79.8, E = 8.1e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +s+ vpEn p e++++ +tDaD g Ng + s ++++ ++F fj12189 627 FSFFVPENFPGYGEIGVISVTDAD--AGRNGWVALSVVNQS--DIFV 669 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id+ G ++ + +LDRE++ + Y+L+veA+D+ g+p+ls fj12189 670 IDTGKGM----LRAKVSLDREQQ--SSYTLWVEAVDG-------GEPALS 706 statvtitVl<-* sta +ti +l fj12189 707 STAKITILLL 716 PF00028.8.fs: domain 5 of 6, from 627 to 716: score 77.9, E = 9.8e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +s+ vpEn p e++++ +tDaD g Ng + s ++++ ++F fj12189 627 FSFFVPENFPGYGEIGVISVTDAD--AGRNGWVALSVVNQS--DIFV 669 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id+ G ++ + +LDRE++ + Y+L+veA+D+ g+p+ls fj12189 670 IDTGKGM----LRAKVSLDREQQ--SSYTLWVEAVDG-------GEPALS 706 statvtitVl<-* sta +ti +l fj12189 707 STAKITILLL 716 PF00028.8.fs: domain 6 of 6, from 734 to 827: score 48.6, E = 2.6e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilg..gnpggw y +p + p G++v+ v A+D+D +g N+ i Ysi+g++g+++ fj12189 734 YLLVLPSTLP-GSPVTEVYAVDKD--TGMNAVIAYSIIGrrGPRPES 777 FrIdpdtGdnegiisttkpL...DREeifngeYeLtveAtDadpllasgg FrIdp+tG i++ + L ++D+ g ++L v+++D+ g fj12189 778 FRIDPKTGN----ITLEEALlqtDY-----GLHRLLVKVSDH------GY 812 gpplsstatvtitVl<-* + pl st++v+ V fj12189 813 PEPLHSTVMVNLFVN 827 PF00028.8.ls: domain 5 of 5, from 734 to 827: score 50.4, E = 5.7e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilg..gnpggw y +p + p G++v+ v A+D+D +g N+ i Ysi+g++g+++ fj12189 734 YLLVLPSTLP-GSPVTEVYAVDKD--TGMNAVIAYSIIGrrGPRPES 777 FrIdpdtGdnegiisttkpL...DREeifngeYeLtveAtDadpllasgg FrIdp+tG i++ + L ++D+ g ++L v+++D+ g fj12189 778 FRIDPKTGN----ITLEEALlqtDY-----GLHRLLVKVSDH------GY 812 gpplsstatvtitVl<-* + pl st++v+ V fj12189 813 PEPLHSTVMVNLFVN 827 //