hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10041496/chunk_1/iprscan-20090618-10041496.nocrc
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Query sequence: fj12189
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 361.5   5.3e-104   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6     215   301 ..     1   121 []    68.4  8.9e-16
SM00112    2/6     325   407 ..     1   121 []     7.1     0.47
SM00112    3/6     437   516 ..     1   121 []    24.0    0.011
SM00112    4/6     540   620 ..     1   121 []   100.1  2.7e-25
SM00112    5/6     644   723 ..     1   121 []   104.0  1.7e-26
SM00112    6/6     750   834 ..     1   121 []    57.9  1.3e-12

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 215 to 301: score 68.4, E = 8.9e-16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtng...
                        A+D+D g    Ng        tY++l+ +++F++d e  +ng+++
     fj12189   215    HPAVDPDVG---INGV------QTYRLLDyhgMFTLDVEENENGert 252  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                   p        +++ ++LDRE+q         ++Y  +++A DgG+pp    
     fj12189   253 P-------YLIVMGALDRETQ---------DQYVSIIIAEDGGSPP---- 282  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              l ++at+t+ + D+NDN P   
     fj12189   283 -----------LLGSATLTIGISDINDNCP    301  

SM00112: domain 2 of 6, from 325 to 407: score 7.1, E = 0.47
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v+A+D+D g   +N++      +tYs +++ ++ +++lF++d++tG 
     fj12189   325    VQAVDKDLG---TNAQ------ITYSYSQkvpqaskdLFHLDENTG- 361  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                            i +++   +              +++ Lt+ A  +G+    
     fj12189   362 --------VIKLFS--KIGGSVL---------ESHKLTILA--NGPGC-- 388  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  +  t  v ++ v   +P   
     fj12189   389 -------------IPAVITALVSIIKVIFRPP    407  

SM00112: domain 3 of 6, from 437 to 516: score 24.0, E = 0.011
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      ++ +D+         k      v + + ++++F++ p    n+    
     fj12189   437    FTIRDPEG-----KYK------VNCYLDGegPFRLSPYKPYNN---- 468  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     e+ + ttkp D+E q         + Y++ v+A ++ g          
     fj12189   469 --EYLLETTKPMDYELQ---------QFYEVAVVAWNSEG---------- 497  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          +     + v++lD NDNaP   
     fj12189   498 -------FHVKRVIKVQLLDDNDNAP    516  

SM00112: domain 4 of 6, from 540 to 620: score 100.1, E = 2.7e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      + AtDaDs+   e g+      v+Y + ++ +++Fs+d+ tG     
     fj12189   540    LYATDADSE---ERGQ------VSYFLGPdapsYFSLDSVTG----- 572  

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                         i+t++ +LDREe+         ++Y+ tv+A+D G pp      
     fj12189   573 ------ILTVSTQLDREEK---------EKYRYTVRAVDCGKPP------ 601  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                            ++s atv  tVlD NDN P   
     fj12189   602 ---------RESVATVALTVLDKNDNSP    620  

SM00112: domain 5 of 6, from 644 to 723: score 104.0, E = 1.7e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      +s+tDaD+g    Ng+      v  s++++++ F Id+  G      
     fj12189   644    ISVTDADAG---RNGW------VALSVVNqsdIFVIDTGKG------ 675  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                         ++++ +LDRE+q         s+YtL veA+DgG+p        
     fj12189   676 -----MLRAKVSLDREQQ---------SSYTLWVEAVDGGEPA------- 704  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           lssta +t+ +lD+NDN+P   
     fj12189   705 --------LSSTAKITILLLDINDNPP    723  

SM00112: domain 6 of 6, from 750 to 834: score 57.9, E = 1.3e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v A+D+D+g    N+       + Ysi+++++++++ F+Idp+tG+ 
     fj12189   750    VYAVDKDTG---MNAV------IAYSIIGrrgprpeSFRIDPKTGN- 786  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                             it+ ++L   +            ++L v+++D+G p p  
     fj12189   787 ----------ITLEEALLQTDY---------GLHRLLVKVSDHGYPEP-- 815  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l st++v+ +V D   N     
     fj12189   816 ------------LHSTVMVNLFVNDTVSNES    834  

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