# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj12194.fasta.nr -Q fj12194.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj12194, 163 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842800 sequences Expectation_n fit: rho(ln(x))= 4.9797+/-0.000186; mu= 6.7117+/- 0.010 mean_var=66.0523+/-13.062, 0's: 45 Z-trim: 50 B-trim: 1153 in 2/62 Lambda= 0.157808 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088020|dbj|BAD92457.1| 26S proteasome-associa ( 163) 1062 250.0 1e-64 gi|62822468|gb|AAY15016.1| unknown [Homo sapiens] ( 156) 1019 240.2 8.5e-62 gi|148695032|gb|EDL26979.1| proteasome (prosome, m ( 295) 1021 240.9 1e-61 gi|2505940|emb|CAA73514.1| 26S proteasome, non-ATP ( 309) 1021 240.9 1.1e-61 gi|74214038|dbj|BAE29436.1| unnamed protein produc ( 310) 1021 240.9 1.1e-61 gi|51701716|sp|O00487|PSDE_HUMAN 26S proteasome no ( 310) 1021 240.9 1.1e-61 gi|109468228|ref|XP_001059730.1| PREDICTED: simila ( 389) 1021 240.9 1.3e-61 gi|126326237|ref|XP_001366701.1| PREDICTED: simila ( 310) 1008 237.9 8.3e-61 gi|27924246|gb|AAH45094.1| Psmd14-prov protein [Xe ( 310) 1005 237.2 1.3e-60 gi|60688345|gb|AAH91596.1| MGC97603 protein [Xenop ( 310) 999 235.9 3.4e-60 gi|126631841|gb|AAI33930.1| Zgc:162272 protein [Da ( 310) 998 235.6 4e-60 gi|47230598|emb|CAF99791.1| unnamed protein produc ( 253) 966 228.3 5.3e-58 gi|72030199|ref|XP_780027.1| PREDICTED: similar to ( 311) 905 214.5 9.5e-54 gi|87248555|gb|ABD36330.1| 26S proteasome non-ATPa ( 311) 903 214.0 1.3e-53 gi|156550346|ref|XP_001606975.1| PREDICTED: simila ( 311) 899 213.1 2.5e-53 gi|167867149|gb|EDS30532.1| 26S proteasome non-ATP ( 310) 894 212.0 5.4e-53 gi|94469152|gb|ABF18425.1| 26S proteasome regulato ( 311) 894 212.0 5.4e-53 gi|74004396|ref|XP_535931.2| PREDICTED: similar to ( 299) 890 211.0 9.9e-53 gi|193688074|ref|XP_001951704.1| PREDICTED: simila ( 311) 886 210.1 1.9e-52 gi|66552230|ref|XP_393559.2| PREDICTED: similar to ( 311) 878 208.3 6.8e-52 gi|190616693|gb|EDV32217.1| GF14156 [Drosophila an ( 308) 875 207.6 1.1e-51 gi|51701863|sp|Q9V3H2|PSDE_DROME 26S proteasome no ( 308) 870 206.5 2.4e-51 gi|194160586|gb|EDW75487.1| GK23790 [Drosophila wi ( 308) 870 206.5 2.4e-51 gi|91088291|ref|XP_966426.1| PREDICTED: similar to ( 311) 870 206.5 2.4e-51 gi|193905022|gb|EDW03889.1| GH10267 [Drosophila gr ( 308) 869 206.3 2.8e-51 gi|156225464|gb|EDO46281.1| predicted protein [Nem ( 310) 869 206.3 2.8e-51 gi|54644283|gb|EAL33024.1| GA14824-PA [Drosophila ( 308) 866 205.6 4.5e-51 gi|55239804|gb|EAA10169.2| AGAP008617-PA [Anophele ( 311) 864 205.1 6.2e-51 gi|194103312|gb|EDW25355.1| GL26475 [Drosophila pe ( 308) 862 204.7 8.4e-51 gi|74004398|ref|XP_857400.1| PREDICTED: similar to ( 242) 856 203.2 1.8e-50 gi|6752672|gb|AAF27818.1|AF195189_1 yippee interac ( 229) 851 202.1 3.8e-50 gi|162676568|gb|EDQ63049.1| predicted protein [Phy ( 309) 792 188.7 5.3e-46 gi|162687825|gb|EDQ74206.1| predicted protein [Phy ( 309) 786 187.4 1.4e-45 gi|147803561|emb|CAN68719.1| hypothetical protein ( 309) 768 183.3 2.3e-44 gi|118487990|gb|ABK95816.1| unknown [Populus trich ( 312) 767 183.1 2.7e-44 gi|21592398|gb|AAM64349.1| 26S proteasome non-ATPa ( 308) 766 182.8 3.2e-44 gi|6630689|dbj|BAA88535.1| putative Pad1 [Oryza sa ( 307) 761 181.7 7e-44 gi|190580347|gb|EDV20431.1| non-ATPase proteasome ( 309) 760 181.5 8.2e-44 gi|54287494|gb|AAV31238.1| putative 26S proteasome ( 307) 759 181.2 9.6e-44 gi|125552076|gb|EAY97785.1| hypothetical protein O ( 307) 759 181.2 9.6e-44 gi|194697934|gb|ACF83051.1| unknown [Zea mays] ( 307) 759 181.2 9.6e-44 gi|145334543|ref|NP_001078617.1| 26S proteasome re ( 259) 757 180.7 1.1e-43 gi|51701846|sp|Q9LT08|PSDE_ARATH 26S proteasome no ( 308) 757 180.8 1.3e-43 gi|14041710|emb|CAC38781.1| putative multidrug res ( 294) 756 180.5 1.5e-43 gi|14034117|emb|CAC38736.1| potential multidrug re ( 308) 756 180.5 1.5e-43 gi|94442896|emb|CAJ91130.1| 26S proteasome subunit ( 230) 754 180.0 1.7e-43 gi|14041178|emb|CAC38755.1| putative multidrug res ( 310) 755 180.3 1.8e-43 gi|156550630|ref|XP_001604607.1| PREDICTED: simila ( 310) 745 178.0 8.8e-43 gi|163771766|gb|EDQ85428.1| predicted protein [Mon ( 303) 740 176.9 1.9e-42 gi|2345100|gb|AAC02298.1| Pad1 homolog [Schistosom ( 313) 736 176.0 3.7e-42 >>gi|62088020|dbj|BAD92457.1| 26S proteasome-associated (163 aa) initn: 1062 init1: 1062 opt: 1062 Z-score: 1317.2 bits: 250.0 E(): 1e-64 Smith-Waterman score: 1062; 100.000% identity (100.000% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINY 10 20 30 40 50 60 70 80 90 100 110 120 fj1219 RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTP 70 80 90 100 110 120 130 140 150 160 fj1219 EQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK ::::::::::::::::::::::::::::::::::::::::::: gi|620 EQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK 130 140 150 160 >>gi|62822468|gb|AAY15016.1| unknown [Homo sapiens] (156 aa) initn: 1019 init1: 1019 opt: 1019 Z-score: 1264.6 bits: 240.2 E(): 8.5e-62 Smith-Waterman score: 1019; 100.000% identity (100.000% similar) in 156 aa overlap (8-163:1-156) 10 20 30 40 50 60 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINY ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 VVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINY 10 20 30 40 50 70 80 90 100 110 120 fj1219 RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTP 60 70 80 90 100 110 130 140 150 160 fj1219 EQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK ::::::::::::::::::::::::::::::::::::::::::: gi|628 EQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK 120 130 140 150 >>gi|148695032|gb|EDL26979.1| proteasome (prosome, macro (295 aa) initn: 1021 init1: 1021 opt: 1021 Z-score: 1263.2 bits: 240.9 E(): 1e-61 Smith-Waterman score: 1021; 99.363% identity (100.000% similar) in 157 aa overlap (7-163:139-295) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|148 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 110 120 130 140 150 160 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES 170 180 190 200 210 220 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 230 240 250 260 270 280 160 fj1219 LDTVVFK ::::::: gi|148 LDTVVFK 290 >>gi|2505940|emb|CAA73514.1| 26S proteasome, non-ATPase (309 aa) initn: 1021 init1: 1021 opt: 1021 Z-score: 1262.9 bits: 240.9 E(): 1.1e-61 Smith-Waterman score: 1021; 99.363% identity (100.000% similar) in 157 aa overlap (7-163:153-309) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|250 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 130 140 150 160 170 180 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES 190 200 210 220 230 240 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 250 260 270 280 290 300 160 fj1219 LDTVVFK ::::::: gi|250 LDTVVFK >>gi|74214038|dbj|BAE29436.1| unnamed protein product [M (310 aa) initn: 1021 init1: 1021 opt: 1021 Z-score: 1262.9 bits: 240.9 E(): 1.1e-61 Smith-Waterman score: 1021; 99.363% identity (100.000% similar) in 157 aa overlap (7-163:154-310) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|742 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 130 140 150 160 170 180 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES 190 200 210 220 230 240 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 250 260 270 280 290 300 160 fj1219 LDTVVFK ::::::: gi|742 LDTVVFK 310 >>gi|51701716|sp|O00487|PSDE_HUMAN 26S proteasome non-AT (310 aa) initn: 1021 init1: 1021 opt: 1021 Z-score: 1262.9 bits: 240.9 E(): 1.1e-61 Smith-Waterman score: 1021; 99.363% identity (100.000% similar) in 157 aa overlap (7-163:154-310) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|517 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 130 140 150 160 170 180 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES 190 200 210 220 230 240 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 250 260 270 280 290 300 160 fj1219 LDTVVFK ::::::: gi|517 LDTVVFK 310 >>gi|109468228|ref|XP_001059730.1| PREDICTED: similar to (389 aa) initn: 1021 init1: 1021 opt: 1021 Z-score: 1261.5 bits: 240.9 E(): 1.3e-61 Smith-Waterman score: 1021; 99.363% identity (100.000% similar) in 157 aa overlap (7-163:233-389) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|109 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 210 220 230 240 250 260 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES 270 280 290 300 310 320 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 330 340 350 360 370 380 160 fj1219 LDTVVFK ::::::: gi|109 LDTVVFK >>gi|126326237|ref|XP_001366701.1| PREDICTED: similar to (310 aa) initn: 1008 init1: 1008 opt: 1008 Z-score: 1246.9 bits: 237.9 E(): 8.3e-61 Smith-Waterman score: 1008; 98.726% identity (99.363% similar) in 157 aa overlap (7-163:154-310) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|126 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 130 140 150 160 170 180 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|126 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKLNES 190 200 210 220 230 240 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 250 260 270 280 290 300 160 fj1219 LDTVVFK ::::::: gi|126 LDTVVFK 310 >>gi|27924246|gb|AAH45094.1| Psmd14-prov protein [Xenopu (310 aa) initn: 1005 init1: 1005 opt: 1005 Z-score: 1243.2 bits: 237.2 E(): 1.3e-60 Smith-Waterman score: 1005; 98.089% identity (99.363% similar) in 157 aa overlap (7-163:154-310) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|279 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 130 140 150 160 170 180 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::. gi|279 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKLNET 190 200 210 220 230 240 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|279 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 250 260 270 280 290 300 160 fj1219 LDTVVFK ::::::: gi|279 LDTVVFK 310 >>gi|60688345|gb|AAH91596.1| MGC97603 protein [Xenopus t (310 aa) initn: 999 init1: 999 opt: 999 Z-score: 1235.8 bits: 235.9 E(): 3.4e-60 Smith-Waterman score: 999; 97.452% identity (99.363% similar) in 157 aa overlap (7-163:154-310) 10 20 30 fj1219 LDTLFLQVVIDAFRLINANMMVLGHEPRQTTSNLGH .::::::::::::::::::::::::::::: gi|606 GVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH 130 140 150 160 170 180 40 50 60 70 80 90 fj1219 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNES :::::::::::::::::::::::::::::::::::::::::::::::::.:::::: ::. gi|606 LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQNYSEHCKLNET 190 200 210 220 230 240 100 110 120 130 140 150 fj1219 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 VVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAM 250 260 270 280 290 300 160 fj1219 LDTVVFK ::::::: gi|606 LDTVVFK 310 163 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 12:30:13 2008 done: Sun Aug 10 12:33:13 2008 Total Scan time: 578.610 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]