hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15082553/chunk_1/iprscan-20090525-15082553.nocrc
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Query sequence: fj12313
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02214.13.fs K+ channel tetramerisation domain               89.4    1.9e-26   1
PF02214.13.ls K+ channel tetramerisation domain               91.3    2.7e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02214.13.fs   1/1      74   162 ..     1   102 []    89.4  1.9e-26
PF02214.13.ls   1/1      74   162 ..     1   102 []    91.3  2.7e-24

Alignments of top-scoring domains:
PF02214.13.fs: domain 1 of 1, from 74 to 162: score 89.4, E = 1.9e-26
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v LN+GG  F T+ sTL+++  dT+L  +++++        +   +d
     fj12313    74    VPLNIGGAHFTTRLSTLRCY-EDTMLAAMFSGR--------HYIPTD 111  

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrpevcldsfleEleFygldel
                   +++ yF+DR+ +hF  +Lnf+R+  G+L+ p + ++++ +E+++y +++l
     fj12313   112 SEGRYFIDRDGTHFGDVLNFLRS--GDLP-PRERVRAVYKEAQYYAIGPL 158  

                   aielC<-*
                    +e+    
     fj12313   159 -LEQL    162  

PF02214.13.ls: domain 1 of 1, from 74 to 162: score 91.3, E = 2.7e-24
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      v LN+GG  F T+ sTL+++  dT+L  +++++        +   +d
     fj12313    74    VPLNIGGAHFTTRLSTLRCY-EDTMLAAMFSGR--------HYIPTD 111  

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrpevcldsfleEleFygldel
                   +++ yF+DR+ +hF  +Lnf+R+  G+L+ p + ++++ +E+++y +++l
     fj12313   112 SEGRYFIDRDGTHFGDVLNFLRS--GDLP-PRERVRAVYKEAQYYAIGPL 158  

                   aielC<-*
                    +e+    
     fj12313   159 -LEQL    162  

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