hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15082553/chunk_1/iprscan-20090525-15082553.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj12313
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00225                                                  44.8    1.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00225    1/1      72   170 ..     1   114 []    44.8  1.1e-08

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 72 to 170: score 44.8, E = 1.1e-08
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      + v l++gg          +f +    ++L ++   ++ + a+f+++
     fj12313    72    EVVPLNIGG---------AHFTT--RLSTLRCY--EDTMLAAMFSGr 105  

                   .........ieldDeallievspeaFralLnflYt.kldlpeedvenvee
                   +  ++++++ +++D      ++ ++F+ +Lnfl++++l + e     v  
     fj12313   106 hyiptdsegRYFID------RDGTHFGDVLNFLRSgDLPPRER----VRA 145  

                   lLelAdfldSYGqip.lvelCeefllknl<-*
                   + ++A+++     i +l e+ e++   +    
     fj12313   146 VYKEAQYY----AIGpLLEQLENMQPLKG    170  

//