# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj13004.fasta.nr -Q fj13004.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj13004, 205 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840134 sequences Expectation_n fit: rho(ln(x))= 5.2250+/-0.000187; mu= 8.9483+/- 0.010 mean_var=83.4216+/-16.216, 0's: 39 Z-trim: 54 B-trim: 0 in 0/65 Lambda= 0.140422 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088022|dbj|BAD92458.1| Hypothetical protein F ( 558) 1440 300.9 2.1e-79 gi|34528939|dbj|BAC85606.1| unnamed protein produc ( 193) 1345 281.2 6.1e-74 gi|148685473|gb|EDL17420.1| coronin, actin binding ( 273) 721 154.9 8.9e-36 gi|119600315|gb|EAW79909.1| coronin, actin binding ( 355) 707 152.2 7.7e-35 gi|1706004|sp|P31146|COR1A_HUMAN Coronin-1A (Coron ( 461) 707 152.3 9.3e-35 gi|114661970|ref|XP_001150369.1| PREDICTED: coroni ( 461) 707 152.3 9.3e-35 gi|1002923|gb|AAA77058.1| coronin-like protein ( 461) 697 150.3 3.8e-34 gi|109128196|ref|XP_001099485.1| PREDICTED: coroni ( 487) 690 148.9 1.1e-33 gi|75075717|sp|Q4R4J2|COR1A_MACFA Coronin-1A (Coro ( 461) 681 147.0 3.6e-33 gi|148685471|gb|EDL17418.1| coronin, actin binding ( 355) 677 146.1 5.2e-33 gi|83754226|pdb|2B4E|A Chain A, Crystal Structure ( 402) 677 146.2 5.7e-33 gi|46397808|sp|O89053|COR1A_MOUSE Coronin-1A (Coro ( 461) 677 146.2 6.3e-33 gi|74192405|dbj|BAE43009.1| unnamed protein produc ( 461) 677 146.2 6.3e-33 gi|4895037|gb|AAD32703.1|AF143955_1 coronin-1 [Mus ( 461) 677 146.2 6.3e-33 gi|31418362|gb|AAH53398.1| Coronin, actin binding ( 461) 677 146.2 6.3e-33 gi|74181442|dbj|BAE29993.1| unnamed protein produc ( 461) 677 146.2 6.3e-33 gi|74207056|dbj|BAE33310.1| unnamed protein produc ( 461) 677 146.2 6.3e-33 gi|149067861|gb|EDM17413.1| coronin, actin binding ( 355) 671 144.9 1.2e-32 gi|81916300|sp|Q91ZN1|COR1A_RAT Coronin-1A (Coroni ( 461) 671 145.0 1.5e-32 gi|73958508|ref|XP_547069.2| PREDICTED: similar to ( 495) 670 144.8 1.8e-32 gi|2494890|sp|Q92176|COR1A_BOVIN Coronin-1A (Coron ( 461) 664 143.6 3.9e-32 gi|83754025|pdb|2AQ5|A Chain A, Crystal Structure ( 402) 662 143.1 4.7e-32 gi|149725775|ref|XP_001502059.1| PREDICTED: simila ( 461) 656 142.0 1.2e-31 gi|126335597|ref|XP_001368750.1| PREDICTED: simila ( 722) 651 141.1 3.4e-31 gi|3642629|gb|AAC36506.1| p57 coronin [Mus musculu ( 121) 631 136.4 1.5e-30 gi|49523001|gb|AAH75371.1| Coronin, actin binding ( 459) 524 115.2 1.3e-23 gi|28278327|gb|AAH45340.1| Coronin, actin binding ( 474) 514 113.2 5.6e-23 gi|169145925|emb|CAQ14761.1| coronin, actin bindin ( 474) 513 113.0 6.4e-23 gi|47223644|emb|CAF99253.1| unnamed protein produc ( 474) 511 112.6 8.5e-23 gi|38181570|gb|AAH61558.1| Coro1b protein [Rattus ( 291) 506 111.4 1.2e-22 gi|38173763|gb|AAH60754.1| MGC69077 protein [Xenop ( 462) 508 112.0 1.3e-22 gi|194381300|dbj|BAG58604.1| unnamed protein produ ( 289) 501 110.4 2.4e-22 gi|32442446|gb|AAP82281.1| Coro1A [Danio rerio] ( 455) 502 110.7 2.9e-22 gi|189519121|ref|XP_683545.3| PREDICTED: wu:fb30e0 (1391) 507 112.2 3.3e-22 gi|156229825|gb|AAI52502.1| Coro1b protein [Danio ( 499) 496 109.6 7.3e-22 gi|47212545|emb|CAF94994.1| unnamed protein produc ( 407) 494 109.1 8.3e-22 gi|47226489|emb|CAG08505.1| unnamed protein produc ( 898) 492 109.0 2e-21 gi|61555058|gb|AAX46653.1| coronin, actin binding ( 331) 486 107.4 2.2e-21 gi|73982823|ref|XP_864662.1| PREDICTED: similar to ( 475) 486 107.5 2.9e-21 gi|73982825|ref|XP_864679.1| PREDICTED: similar to ( 478) 486 107.5 2.9e-21 gi|54035918|sp|Q9XS70.1|COR1B_RABIT Coronin-1B (Co ( 486) 486 107.5 2.9e-21 gi|164420723|ref|NP_001106714.1| coronin, actin bi ( 488) 486 107.5 2.9e-21 gi|73982819|ref|XP_533215.2| PREDICTED: similar to ( 489) 486 107.5 2.9e-21 gi|91208252|sp|Q5NVK4.2|COR1B_PONAB Coronin-1B ( 489) 485 107.3 3.4e-21 gi|56403738|emb|CAI29659.1| hypothetical protein [ ( 502) 485 107.3 3.4e-21 gi|149061951|gb|EDM12374.1| coronin, actin-binding ( 484) 482 106.7 5.1e-21 gi|62088738|dbj|BAD92816.1| coronin, actin binding ( 287) 479 105.9 5.3e-21 gi|148701071|gb|EDL33018.1| coronin, actin binding ( 377) 479 106.0 6.4e-21 gi|12229769|sp|Q9WUM3.1|COR1B_MOUSE Coronin-1B (Co ( 484) 479 106.1 7.7e-21 gi|194218536|ref|XP_001917564.1| PREDICTED: coroni ( 489) 479 106.1 7.8e-21 >>gi|62088022|dbj|BAD92458.1| Hypothetical protein FLJ41 (558 aa) initn: 1440 init1: 1440 opt: 1440 Z-score: 1580.6 bits: 300.9 E(): 2.1e-79 Smith-Waterman score: 1440; 100.000% identity (100.000% similar) in 205 aa overlap (1-205:201-405) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEV :::::::::::::::::::::::::::::: gi|620 VAWHTTAQNVLLSAGAAGGGAWGWLVACSGHCGERAGCDNVIMVWDVGTGAAMLTLGPEV 180 190 200 210 220 230 40 50 60 70 80 90 fj1300 HPDTIYSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HPDTIYSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKI 240 250 260 270 280 290 100 110 120 130 140 150 fj1300 LTTGFSRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LTTGFSRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMV 300 310 320 330 340 350 160 170 180 190 200 fj1300 VPTGWSGGPSQVTAQGRPPSQGLGCYLSPVSTEAPGGAAVPAGAGHQQRCPAALL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VPTGWSGGPSQVTAQGRPPSQGLGCYLSPVSTEAPGGAAVPAGAGHQQRCPAALLPQHAP 360 370 380 390 400 410 gi|620 WAVGSPKPTQPDCGPRSPSPSHRFYKLHERRCEPIAMTVPRKSDLFQEDLYPPTAGPDPA 420 430 440 450 460 470 >>gi|34528939|dbj|BAC85606.1| unnamed protein product [H (193 aa) initn: 1345 init1: 1345 opt: 1345 Z-score: 1482.7 bits: 281.2 E(): 6.1e-74 Smith-Waterman score: 1345; 100.000% identity (100.000% similar) in 193 aa overlap (13-205:1-193) 10 20 30 40 50 60 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTIYSVDWSRDGGLICTSCRDKRVRIIE :::::::::::::::::::::::::::::::::::::::::::::::: gi|345 MVWDVGTGAAMLTLGPEVHPDTIYSVDWSRDGGLICTSCRDKRVRIIE 10 20 30 40 70 80 90 100 110 120 fj1300 PRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGFSRMSERQVALWDTVSAGAGSRGPPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 PRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGFSRMSERQVALWDTVSAGAGSRGPPG 50 60 70 80 90 100 130 140 150 160 170 180 fj1300 WEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGWSGGPSQVTAQGRPPSQGLGCYLSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 WEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGWSGGPSQVTAQGRPPSQGLGCYLSPV 110 120 130 140 150 160 190 200 fj1300 STEAPGGAAVPAGAGHQQRCPAALL ::::::::::::::::::::::::: gi|345 STEAPGGAAVPAGAGHQQRCPAALL 170 180 190 >>gi|148685473|gb|EDL17420.1| coronin, actin binding pro (273 aa) initn: 692 init1: 692 opt: 721 Z-score: 797.5 bits: 154.9 E(): 8.9e-36 Smith-Waterman score: 721; 85.484% identity (93.548% similar) in 124 aa overlap (6-129:150-271) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::.:::::::::.:::::.:::::: gi|148 LREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 120 130 140 150 160 170 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::.::::::::::::.::::::::::::::::::::::.:::::::::::::: gi|148 YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF 180 190 200 210 220 230 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW :::::::::::::::: ..:: :: :.. : gi|148 SRMSERQVALWDTVSA--ETQGPAGWGSGLDAYSTT 240 250 260 270 160 170 180 190 200 fj1300 SGGPSQVTAQGRPPSQGLGCYLSPVSTEAPGGAAVPAGAGHQQRCPAALL >>gi|119600315|gb|EAW79909.1| coronin, actin binding pro (355 aa) initn: 707 init1: 707 opt: 707 Z-score: 780.7 bits: 152.2 E(): 7.7e-35 Smith-Waterman score: 707; 100.000% identity (100.000% similar) in 103 aa overlap (6-108:44-146) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::::::::::::::::::::::::: gi|119 LREPVVTLEGHTKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI 20 30 40 50 60 70 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF 80 90 100 110 120 130 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::::::::::: gi|119 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 140 150 160 170 180 190 >>gi|1706004|sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-l (461 aa) initn: 707 init1: 707 opt: 707 Z-score: 779.2 bits: 152.3 E(): 9.3e-35 Smith-Waterman score: 707; 100.000% identity (100.000% similar) in 103 aa overlap (6-108:150-252) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::::::::::::::::::::::::: gi|170 LREPVVTLEGHTKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI 120 130 140 150 160 170 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF 180 190 200 210 220 230 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::::::::::: gi|170 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 240 250 260 270 280 290 >>gi|114661970|ref|XP_001150369.1| PREDICTED: coronin, a (461 aa) initn: 707 init1: 707 opt: 707 Z-score: 779.2 bits: 152.3 E(): 9.3e-35 Smith-Waterman score: 707; 100.000% identity (100.000% similar) in 103 aa overlap (6-108:150-252) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::::::::::::::::::::::::: gi|114 LREPVVTLEGHTKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI 120 130 140 150 160 170 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF 180 190 200 210 220 230 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::::::::::: gi|114 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 240 250 260 270 280 290 >>gi|1002923|gb|AAA77058.1| coronin-like protein (461 aa) initn: 697 init1: 697 opt: 697 Z-score: 768.2 bits: 150.3 E(): 3.8e-34 Smith-Waterman score: 697; 99.029% identity (99.029% similar) in 103 aa overlap (6-108:150-252) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::::::::::::::::::::::::: gi|100 LREPVVTLEGHTKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI 120 130 140 150 160 170 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|100 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF 180 190 200 210 220 230 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::: ::::::: gi|100 SRMSEWQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 240 250 260 270 280 290 >>gi|109128196|ref|XP_001099485.1| PREDICTED: coronin, a (487 aa) initn: 690 init1: 690 opt: 690 Z-score: 760.3 bits: 148.9 E(): 1.1e-33 Smith-Waterman score: 690; 98.058% identity (99.029% similar) in 103 aa overlap (6-108:150-252) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::::::::::::.:::::::::::: gi|109 LREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIMVWDVGTGAAVLTLGPEVHPDTI 120 130 140 150 160 170 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|109 YSVDWSRDGGLICTSCRDKRVRIIEPRKCTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF 180 190 200 210 220 230 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::::::::::: gi|109 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 240 250 260 270 280 290 >>gi|75075717|sp|Q4R4J2|COR1A_MACFA Coronin-1A (Coronin- (461 aa) initn: 713 init1: 681 opt: 681 Z-score: 750.7 bits: 147.0 E(): 3.6e-33 Smith-Waterman score: 681; 97.087% identity (98.058% similar) in 103 aa overlap (6-108:150-252) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::::::::::::.:::::::::::: gi|750 LREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIMVWDVGTGAAVLTLGPEVHPDTI 120 130 140 150 160 170 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|750 YSVDWSRDGGLICTSCRDKRVRIIEPRKCTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF 180 190 200 210 220 230 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::::::::: : gi|750 SRMSERQVALWGTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 240 250 260 270 280 290 >>gi|148685471|gb|EDL17418.1| coronin, actin binding pro (355 aa) initn: 677 init1: 677 opt: 677 Z-score: 747.8 bits: 146.1 E(): 5.2e-33 Smith-Waterman score: 677; 94.175% identity (100.000% similar) in 103 aa overlap (6-108:44-146) 10 20 30 fj1300 HCGERAGCDNVIMVWDVGTGAAMLTLGPEVHPDTI :::::::.:::::::::.:::::.:::::: gi|148 LREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 20 30 40 50 60 70 40 50 60 70 80 90 fj1300 YSVDWSRDGGLICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGF :::::::::.::::::::::::.::::::::::::::::::::::.:::::::::::::: gi|148 YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF 80 90 100 110 120 130 100 110 120 130 140 150 fj1300 SRMSERQVALWDTVSAGAGSRGPPGWEPRLEVSSLLCHSPGRMAMGLSLPRREMVVPTGW ::::::::::::: gi|148 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 140 150 160 170 180 190 205 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 12:38:53 2008 done: Sun Aug 10 12:41:47 2008 Total Scan time: 644.810 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]