hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-12414994/chunk_1/iprscan-20080810-12414994.nocrc
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Query sequence: fj13004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        30.4    1.3e-07   2
PF00400.22.ls WD domain, G-beta repeat                        26.0    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/1      22    60 ..     1    38 []    26.0  0.00012
PF00400.22.fs   2/2      31    60 ..     8    38 .]    24.9  4.7e-06

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 1, from 22 to 60: score 26.0, E = 0.00012
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++   + H +t+++v++s d g l+++++rD+ ++i +   
     fj13004    22    AMLTlGPeVHPDTIYSVDWSRD-GGLICTSCRDKRVRIIE    60   

PF00400.22.fs: domain 2 of 2, from 31 to 60: score 24.9, E = 4.7e-06
                   *->HtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      H +t+++v++s d g l+++++rD+ ++i +   
     fj13004    31    HPDTIYSVDWSRD-GGLICTSCRDKRVRIIE    60   

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