hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-12414994/chunk_1/iprscan-20080810-12414994.nocrc
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Query sequence: fj13004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  27.8     0.0015   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/1      19    60 ..     1    46 []    27.8   0.0015

Alignments of top-scoring domains:
SM00320: domain 1 of 1, from 19 to 60: score 27.8, E = 0.0015
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      t+    tl ++ H +   ++sv++s dg       l++++++D+ +r
     fj13004    19    TgAAMLTLGpeVHPD--TIYSVDWSRDG------GLICTSCrDKRVR 57   

                   lWd<-*
                   + +   
     fj13004    58 IIE    60   

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