# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj13057.fasta.nr -Q fj13057.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj13057, 443 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6839181 sequences Expectation_n fit: rho(ln(x))= 4.9465+/-0.000186; mu= 12.5189+/- 0.010 mean_var=74.7757+/-14.353, 0's: 37 Z-trim: 61 B-trim: 80 in 1/66 Lambda= 0.148318 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087360|dbj|BAD92127.1| potassium voltage-gate ( 443) 2950 640.5 2.1e-181 gi|2801450|gb|AAB97314.1| potassium channel homolo ( 825) 2738 595.4 1.5e-167 gi|124504639|gb|AAI28577.1| KCNQ3 protein [Homo sa ( 849) 2738 595.4 1.5e-167 gi|114621767|ref|XP_001134760.1| PREDICTED: potass ( 872) 2738 595.4 1.5e-167 gi|5921785|sp|O43525|KCNQ3_HUMAN Potassium voltage ( 872) 2738 595.4 1.5e-167 gi|109087494|ref|XP_001089122.1| PREDICTED: simila ( 951) 2737 595.2 1.9e-167 gi|109730777|gb|AAI16307.1| Kcnq3 protein [Mus mus ( 870) 2721 591.8 1.9e-166 gi|20141167|sp|O88944|KCNQ3_RAT Potassium voltage- ( 873) 2721 591.8 1.9e-166 gi|66774016|sp|Q8K3F6|KCNQ3_MOUSE Potassium voltag ( 873) 2721 591.8 1.9e-166 gi|14285393|sp|P58126|KCNQ3_BOVIN Potassium voltag ( 866) 2715 590.5 4.6e-166 gi|119612547|gb|EAW92141.1| potassium voltage-gate ( 870) 2712 589.9 7.2e-166 gi|126322334|ref|XP_001370693.1| PREDICTED: simila ( 878) 2688 584.7 2.5e-164 gi|3929231|gb|AAC79846.1| potassium channel [Rattu ( 835) 2669 580.6 4.1e-163 gi|194215116|ref|XP_001916559.1| PREDICTED: potass ( 866) 2617 569.5 9.4e-160 gi|54401346|gb|AAV34442.1| voltage-gated potassium ( 852) 2570 559.5 9.9e-157 gi|194382880|dbj|BAG58996.1| unnamed protein produ ( 752) 2376 517.9 2.8e-144 gi|149410122|ref|XP_001508650.1| PREDICTED: simila ( 831) 2320 506.0 1.2e-140 gi|119612548|gb|EAW92142.1| potassium voltage-gate ( 447) 2245 489.7 5.3e-136 gi|149066289|gb|EDM16162.1| potassium voltage-gate ( 515) 2232 486.9 4.1e-135 gi|149066290|gb|EDM16163.1| potassium voltage-gate ( 410) 2180 475.7 7.7e-132 gi|156230191|gb|AAI51904.1| Si:ch211-66b9.3 protei ( 401) 1874 410.2 3.9e-112 gi|148697421|gb|EDL29368.1| potassium voltage-gate ( 666) 1805 395.7 1.6e-107 gi|194035556|ref|XP_001924242.1| PREDICTED: simila ( 855) 1497 329.9 1.3e-87 gi|85718145|gb|ABC75089.1| potassium channel volta ( 572) 1409 310.9 4.5e-82 gi|158253484|gb|AAI54026.1| Unknown (protein for M ( 349) 1404 309.6 6.6e-82 gi|73974625|ref|XP_532334.2| PREDICTED: similar to (1473) 1138 253.3 2.6e-64 gi|145976755|gb|ABQ00665.1| potassium channel prot ( 671) 1113 247.6 5.9e-63 gi|125380516|gb|ABN41465.1| KvLQT-1 [Xenopus laevi ( 652) 1107 246.3 1.4e-62 gi|148686257|gb|EDL18204.1| potassium voltage-gate ( 440) 1104 245.5 1.7e-62 gi|22779261|dbj|BAC15571.1| Q1-type potassium chan ( 440) 1104 245.5 1.7e-62 gi|14285397|sp|P70057|KCNQ1_XENLA Potassium voltag ( 377) 1103 245.2 1.7e-62 gi|169641876|gb|AAI60535.1| Unknown (protein for I ( 390) 1102 245.0 2e-62 gi|1680718|gb|AAB36518.1| potassium channel subuni ( 604) 1104 245.6 2.1e-62 gi|148686258|gb|EDL18205.1| potassium voltage-gate ( 604) 1104 245.6 2.1e-62 gi|54041066|sp|P97414|KCNQ1_MOUSE Potassium voltag ( 668) 1104 245.7 2.2e-62 gi|33115185|gb|AAH55304.1| Potassium voltage-gated ( 668) 1104 245.7 2.2e-62 gi|14285391|sp|O73925|KCNQ1_SQUAC Potassium voltag ( 660) 1099 244.6 4.7e-62 gi|118091304|ref|XP_421022.2| PREDICTED: similar t ( 643) 1098 244.4 5.3e-62 gi|149061767|gb|EDM12190.1| potassium voltage-gate ( 669) 1097 244.2 6.3e-62 gi|14285388|sp|Q9Z0N7|KCNQ1_RAT Potassium voltage- ( 669) 1097 244.2 6.3e-62 gi|119919427|ref|XP_001252338.1| PREDICTED: simila ( 670) 1085 241.6 3.8e-61 gi|187023010|emb|CAP37689.1| C. briggsae CBR-KQT-3 ( 631) 1083 241.2 4.8e-61 gi|169146171|emb|CAQ15084.1| novel protein similar ( 655) 1083 241.2 5e-61 gi|31711384|gb|AAM94040.1| potassium channel prote ( 669) 1081 240.8 6.8e-61 gi|6166005|sp|P51787|KCNQ1_HUMAN Potassium voltage ( 676) 1081 240.8 6.9e-61 gi|2465515|gb|AAC51781.1| voltage gated potassium ( 581) 1077 239.8 1.1e-60 gi|120538135|gb|AAI29218.1| Potassium voltage-gate ( 485) 1073 238.9 1.8e-60 gi|5042385|emb|CAB44649.1| KvLQT1 [Homo sapiens] ( 676) 1071 238.6 3e-60 gi|25815099|emb|CAA21699.2| C. elegans protein Y54 ( 621) 1060 236.2 1.5e-59 gi|50429318|gb|AAT77228.1| KQT-3 potassium channel ( 580) 1058 235.8 1.9e-59 >>gi|62087360|dbj|BAD92127.1| potassium voltage-gated ch (443 aa) initn: 2950 init1: 2950 opt: 2950 Z-score: 3412.1 bits: 640.5 E(): 2.1e-181 Smith-Waterman score: 2950; 100.000% identity (100.000% similar) in 443 aa overlap (1-443:1-443) 10 20 30 40 50 60 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKYRRIQTLIYDALERPRGWALLYHALVFLIVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKYRRIQTLIYDALERPRGWALLYHALVFLIVL 10 20 30 40 50 60 70 80 90 100 110 120 fj1305 GCLILAVLTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GCLILAVLTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFA 70 80 90 100 110 120 130 140 150 160 170 180 fj1305 RKPLCMLDIFVLIASVPVVAVGNQGNVLATSLRSLRFLQILRMLRMDRRGGTWKLLGSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RKPLCMLDIFVLIASVPVVAVGNQGNVLATSLRSLRFLQILRMLRMDRRGGTWKLLGSAI 130 140 150 160 170 180 190 200 210 220 230 240 fj1305 YAHSKELITAWYIGFLTLILSSFLVYLVEKDVPEVDAQGEEMKEEFETYADALWWGLITL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YAHSKELITAWYIGFLTLILSSFLVYLVEKDVPEVDAQGEEMKEEFETYADALWWGLITL 190 200 210 220 230 240 250 260 270 280 290 300 fj1305 ATIGYGDKTPKTWEGRLIAATFSLIGVSFFALPAGILGSGLALKVQEQHRQKHFEKRRKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ATIGYGDKTPKTWEGRLIAATFSLIGVSFFALPAGILGSGLALKVQEQHRQKHFEKRRKP 250 260 270 280 290 300 310 320 330 340 350 360 fj1305 AAELIQAAWRYYATNPNRIDLVATWRFYESVVSFPFFRKEQLEAASSQKLGLLDRVRLSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAELIQAAWRYYATNPNRIDLVATWRFYESVVSFPFFRKEQLEAASSQKLGLLDRVRLSN 310 320 330 340 350 360 370 380 390 400 410 420 fj1305 PRGSNTKGKLFTPLNVDAIEESPSKEPKPVGLNNKERFRTAFRMKAYAFWQSSEGNAFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PRGSNTKGKLFTPLNVDAIEESPSKEPKPVGLNNKERFRTAFRMKAYAFWQSSEGNAFLS 370 380 390 400 410 420 430 440 fj1305 PSLSLPLLPPPSPLPSSPLPLPT ::::::::::::::::::::::: gi|620 PSLSLPLLPPPSPLPSSPLPLPT 430 440 >>gi|2801450|gb|AAB97314.1| potassium channel homolog; K (825 aa) initn: 2761 init1: 2736 opt: 2738 Z-score: 3163.4 bits: 595.4 E(): 1.5e-167 Smith-Waterman score: 2738; 98.337% identity (98.812% similar) in 421 aa overlap (1-421:28-448) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKYRRI ::::::::::::::::::::::::::::::::: gi|280 GDVEQVTLALGAGADKDGTLLLEGGGRDEGQRRTPQGIGLLAKTPLSRPVKRNNAKYRRI 10 20 30 40 50 60 40 50 60 70 80 90 fj1305 QTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAIFIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 QTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAIFIF 70 80 90 100 110 120 100 110 120 130 140 150 fj1305 GAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLATSLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 GAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLATSLR 130 140 150 160 170 180 160 170 180 190 200 210 fj1305 SLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEKDVP ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|280 SLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEKDVP 190 200 210 220 230 240 220 230 240 250 260 270 fj1305 EVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFFALP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 EVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFFALP 250 260 270 280 290 300 280 290 300 310 320 330 fj1305 AGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYESVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 AGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYESVVS 310 320 330 340 350 360 340 350 360 370 380 390 fj1305 FPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPVGLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|280 FPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPVGLN 370 380 390 400 410 420 400 410 420 430 440 fj1305 NKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT ::::::::::::::::::::: . .: gi|280 NKERFRTAFRMKAYAFWQSSEDAGTGDPMAEDRGYGNDFPIEDMIPTLKAAIRAVRILQF 430 440 450 460 470 480 >>gi|124504639|gb|AAI28577.1| KCNQ3 protein [Homo sapien (849 aa) initn: 2736 init1: 2736 opt: 2738 Z-score: 3163.3 bits: 595.4 E(): 1.5e-167 Smith-Waterman score: 2738; 98.337% identity (98.812% similar) in 421 aa overlap (1-421:64-484) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY :::::::::::::::::::::::::::::: gi|124 LAPGDVEQVTLALGAGANKDGTLLLEGGGRDEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 40 50 60 70 80 90 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 100 110 120 130 140 150 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 160 170 180 190 200 210 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|124 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 220 230 240 250 260 270 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 280 290 300 310 320 330 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES 340 350 360 370 380 390 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|124 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 400 410 420 430 440 450 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .: gi|124 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPMAEDRGYGNDFPIEDMIPTLKAAIRAVRI 460 470 480 490 500 510 gi|124 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 520 530 540 550 560 570 >>gi|114621767|ref|XP_001134760.1| PREDICTED: potassium (872 aa) initn: 2761 init1: 2736 opt: 2738 Z-score: 3163.1 bits: 595.4 E(): 1.5e-167 Smith-Waterman score: 2738; 98.337% identity (98.812% similar) in 421 aa overlap (1-421:75-495) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY :::::::::::::::::::::::::::::: gi|114 LAPGDVEQVTLALGAGADKDGTLLLEGGGRDEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 50 60 70 80 90 100 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 110 120 130 140 150 160 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 170 180 190 200 210 220 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|114 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 230 240 250 260 270 280 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 290 300 310 320 330 340 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES 350 360 370 380 390 400 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 410 420 430 440 450 460 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .: gi|114 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPMAEDRGYGNDFPIEDMIPTLKAAIRAVRI 470 480 490 500 510 520 gi|114 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 530 540 550 560 570 580 >>gi|5921785|sp|O43525|KCNQ3_HUMAN Potassium voltage-gat (872 aa) initn: 2761 init1: 2736 opt: 2738 Z-score: 3163.1 bits: 595.4 E(): 1.5e-167 Smith-Waterman score: 2738; 98.337% identity (98.812% similar) in 421 aa overlap (1-421:75-495) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY :::::::::::::::::::::::::::::: gi|592 LAPGDVEQVTLALGAGADKDGTLLLEGGGRDEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 50 60 70 80 90 100 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|592 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 110 120 130 140 150 160 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|592 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 170 180 190 200 210 220 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|592 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 230 240 250 260 270 280 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|592 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 290 300 310 320 330 340 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|592 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES 350 360 370 380 390 400 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|592 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 410 420 430 440 450 460 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .: gi|592 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPMAEDRGYGNDFPIEDMIPTLKAAIRAVRI 470 480 490 500 510 520 gi|592 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 530 540 550 560 570 580 >>gi|109087494|ref|XP_001089122.1| PREDICTED: similar to (951 aa) initn: 2758 init1: 2733 opt: 2737 Z-score: 3161.4 bits: 595.2 E(): 1.9e-167 Smith-Waterman score: 2737; 97.867% identity (98.815% similar) in 422 aa overlap (1-422:154-575) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY :::::::::::::::::::.:::::::::: gi|109 LAPGDVEQVTLALGAGADKDGTLLLEGGGRDEGQRRTPQGIGLLAKTPLTRPVKRNNAKY 130 140 150 160 170 180 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 190 200 210 220 230 240 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 250 260 270 280 290 300 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|109 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 310 320 330 340 350 360 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 370 380 390 400 410 420 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES 430 440 450 460 470 480 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 490 500 510 520 530 540 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .:. gi|109 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPTAEDRGYGNDFPIEDMIPTLKAAIRAVRI 550 560 570 580 590 600 gi|109 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 610 620 630 640 650 660 >>gi|109730777|gb|AAI16307.1| Kcnq3 protein [Mus musculu (870 aa) initn: 2719 init1: 2719 opt: 2721 Z-score: 3143.5 bits: 591.8 E(): 1.9e-166 Smith-Waterman score: 2721; 97.387% identity (98.812% similar) in 421 aa overlap (1-421:73-493) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY .::::::::::::::::::::::::::::: gi|109 LAPGDVEQVTLALGAGADKDGTLLLEGGGREEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 50 60 70 80 90 100 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 110 120 130 140 150 160 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 170 180 190 200 210 220 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|109 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 230 240 250 260 270 280 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DVPEMDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 290 300 310 320 330 340 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|109 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRLDLVATWRFYES 350 360 370 380 390 400 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|109 VVSFPFFRKEQLEAAASQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 410 420 430 440 450 460 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .: gi|109 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPMAEDRGYGNDFLIEDMIPTLKAAIRAVRI 470 480 490 500 510 520 gi|109 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 530 540 550 560 570 580 >>gi|20141167|sp|O88944|KCNQ3_RAT Potassium voltage-gate (873 aa) initn: 2719 init1: 2719 opt: 2721 Z-score: 3143.4 bits: 591.8 E(): 1.9e-166 Smith-Waterman score: 2721; 97.387% identity (98.812% similar) in 421 aa overlap (1-421:76-496) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY .::::::::::::::::::::::::::::: gi|201 LAPGDVEQVTLALGTGADKDGTLLLEGGGREEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 50 60 70 80 90 100 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 110 120 130 140 150 160 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 170 180 190 200 210 220 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|201 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 230 240 250 260 270 280 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 DVPEMDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 290 300 310 320 330 340 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|201 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRLDLVATWRFYES 350 360 370 380 390 400 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|201 VVSFPFFRKEQLEAAASQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 410 420 430 440 450 460 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .: gi|201 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPMTEDRGYGNDFLIEDMIPTLKAAIRAVRI 470 480 490 500 510 520 gi|201 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 530 540 550 560 570 580 >>gi|66774016|sp|Q8K3F6|KCNQ3_MOUSE Potassium voltage-ga (873 aa) initn: 2719 init1: 2719 opt: 2721 Z-score: 3143.4 bits: 591.8 E(): 1.9e-166 Smith-Waterman score: 2721; 97.387% identity (98.812% similar) in 421 aa overlap (1-421:76-496) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY .::::::::::::::::::::::::::::: gi|667 LAPGDVEQVTLALGAGADKDGTLLLEGGGREEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 50 60 70 80 90 100 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI 110 120 130 140 150 160 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 170 180 190 200 210 220 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|667 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 230 240 250 260 270 280 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 DVPEMDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 290 300 310 320 330 340 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|667 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRLDLVATWRFYES 350 360 370 380 390 400 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|667 VVSFPFFRKEQLEAAASQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 410 420 430 440 450 460 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT :::::::::::::::::::::::: . .: gi|667 GLNNKERFRTAFRMKAYAFWQSSEDAGTGDPMAEDRGYGNDFLIEDMIPTLKAAIRAVRI 470 480 490 500 510 520 gi|667 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 530 540 550 560 570 580 >>gi|14285393|sp|P58126|KCNQ3_BOVIN Potassium voltage-ga (866 aa) initn: 2737 init1: 2711 opt: 2715 Z-score: 3136.5 bits: 590.5 E(): 4.6e-166 Smith-Waterman score: 2715; 96.919% identity (98.341% similar) in 422 aa overlap (1-422:75-496) 10 20 30 fj1305 DEGQRRTPQGIGLLAKTPLSRPVKRNNAKY :::::::::::::::::::::::::::::: gi|142 LAPGDVEQVTLALGAGADKDGTLLLEGGGRDEGQRRTPQGIGLLAKTPLSRPVKRNNAKY 50 60 70 80 90 100 40 50 60 70 80 90 fj1305 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAI :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|142 RRIQTLIYDALERPRGWALLYHALVFLIVLGCLILAVLTTFREYETVSGDWLLLLETFAI 110 120 130 140 150 160 100 110 120 130 140 150 fj1305 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|142 FIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLAT 170 180 190 200 210 220 160 170 180 190 200 210 fj1305 SLRSLRFLQILRMLRMDRRGGTWKLLGSAIYAHSKELITAWYIGFLTLILSSFLVYLVEK :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|142 SLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEK 230 240 250 260 270 280 220 230 240 250 260 270 fj1305 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|142 DVPEVDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFF 290 300 310 320 330 340 280 290 300 310 320 330 fj1305 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|142 ALPAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES 350 360 370 380 390 400 340 350 360 370 380 390 fj1305 VVSFPFFRKEQLEAASSQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV ::::::::::::. :.:::::::::::::::::::::::::::::::::::::::::::: gi|142 VVSFPFFRKEQLDPAASQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPV 410 420 430 440 450 460 400 410 420 430 440 fj1305 GLNNKERFRTAFRMKAYAFWQSSEGNAFLSPSLSLPLLPPPSPLPSSPLPLPT : :::::::::::::::::::::: . .:. gi|142 GSNNKERFRTAFRMKAYAFWQSSEDAGTGDPTAEDRGYGNDFLIEDMIPTLKAAIRAVRI 470 480 490 500 510 520 gi|142 LQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRIDMIFTPGPPSTPKHKK 530 540 550 560 570 580 443 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 12:52:44 2008 done: Sun Aug 10 12:55:13 2008 Total Scan time: 847.790 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]