hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-12551583/chunk_1/iprscan-20080810-12551583.nocrc
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Query sequence: fj13057
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00520.21.fs Ion transport protein                        98.5    3.6e-27   1
PF00520.21.ls Ion transport protein                       100.4    5.1e-27   1
PF07885.6.fs Ion channel                                  54.8    1.5e-15   1
PF07885.6.ls Ion channel                                  56.8    6.5e-14   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/1      84   277 ..     1   224 []    98.5  3.6e-27
PF00520.21.ls   1/1      84   277 ..     1   224 []   100.4  5.1e-27
PF07885.6.fs   1/1     192   283 ..     1    81 []    54.8  1.5e-15
PF07885.6.ls   1/1     192   283 ..     1    81 []    56.8  6.5e-14

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 1, from 84 to 277: score 98.5, E = 3.6e-27
                   *->ildyvftviFtlEmllkiialgfklhsr...iafkYlrspwNilDfl
                       l+++ ++iF +E+ l+i+a+g+++ + + + ++k+ r+p ++lD++
     fj13057    84    LLETFAIFIFGAEFALRIWAAGCCCRYKgwrGRLKFARKPLCMLDIF 130  

                   vvlpslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllR
                   v + s+  +++  +g+                          + +lR lR
     fj13057   131 VLIASVPVVAVGNQGN------------------------VLATSLRSLR 156  

                   vLRllrlirrapglfRWelrtl..We.lnslgrslksllnvllllllllf
                      +l ++r+ ++      r++++W+ l+s +++  + l  ++ + +l +
     fj13057   157 ---FLQILRMLRM-----DRRGgtWKlLGSAIYAHSKELITAWYIGFLTL 198  

                   iFaiigvqlFggklnkcc.npingntnFdsfgnaflwlFqtmTteGwgdv
                   i + ++v+l  +   + +  +++ +  F+++  a++w ++t+ t+G+gd 
     fj13057   199 ILSSFLVYLVEKDVPEVDaQGEEMKEEFETYADALWWGLITLATIGYGDK 248  

                   mpdtlagtvlgyiyfvsfiilgsflllNLfiavi<-*
                   +p+    t+ g +++ + + l+++ +++L+ +++   
     fj13057   249 TPK----TWEGRLIA-ATFSLIGVSFFALPAGIL    277  

PF00520.21.ls: domain 1 of 1, from 84 to 277: score 100.4, E = 5.1e-27
                   *->ildyvftviFtlEmllkiialgfklhsr...iafkYlrspwNilDfl
                       l+++ ++iF +E+ l+i+a+g+++ + + + ++k+ r+p ++lD++
     fj13057    84    LLETFAIFIFGAEFALRIWAAGCCCRYKgwrGRLKFARKPLCMLDIF 130  

                   vvlpslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllR
                   v + s+  +++  +g+                          + +lR lR
     fj13057   131 VLIASVPVVAVGNQGN------------------------VLATSLRSLR 156  

                   vLRllrlirrapglfRWelrtl..We.lnslgrslksllnvllllllllf
                      +l ++r+ ++      r++++W+ l+s +++  + l  ++ + +l +
     fj13057   157 ---FLQILRMLRM-----DRRGgtWKlLGSAIYAHSKELITAWYIGFLTL 198  

                   iFaiigvqlFggklnkcc.npingntnFdsfgnaflwlFqtmTteGwgdv
                   i + ++v+l  +   + +  +++ +  F+++  a++w ++t+ t+G+gd 
     fj13057   199 ILSSFLVYLVEKDVPEVDaQGEEMKEEFETYADALWWGLITLATIGYGDK 248  

                   mpdtlagtvlgyiyfvsfiilgsflllNLfiavi<-*
                   +p+    t+ g +++ + + l+++ +++L+ +++   
     fj13057   249 TPK----TWEGRLIA-ATFSLIGVSFFALPAGIL    277  

PF07885.6.fs: domain 1 of 1, from 192 to 283: score 54.8, E = 1.5e-15
                   *->iilllvlifgtvyyal..........epeeg.we.wsfldalYFsfv
                       i +l+li+++++++l +++ ++ + ++ee + e  ++ dal++ ++
     fj13057   192    YIGFLTLILSSFLVYLvekdvpevdaQGEEMkEEfETYADALWWGLI 238  

                   TlTTiGYGDivPlstdaGRlftivyiliGiplfalllavlgrflte<-*
                   Tl+TiGYGD +P  t  GRl++  + liG+++fal  ++lg+ l     
     fj13057   239 TLATIGYGDKTPK-TWEGRLIAATFSLIGVSFFALPAGILGSGLAL    283  

PF07885.6.ls: domain 1 of 1, from 192 to 283: score 56.8, E = 6.5e-14
                   *->iilllvlifgtvyyal..........epeeg.we.wsfldalYFsfv
                       i +l+li+++++++l +++ ++ + ++ee + e  ++ dal++ ++
     fj13057   192    YIGFLTLILSSFLVYLvekdvpevdaQGEEMkEEfETYADALWWGLI 238  

                   TlTTiGYGDivPlstdaGRlftivyiliGiplfalllavlgrflte<-*
                   Tl+TiGYGD +P  t  GRl++  + liG+++fal  ++lg+ l     
     fj13057   239 TLATIGYGDKTPK-TWEGRLIAATFSLIGVSFFALPAGILGSGLAL    283  

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