# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj13058.fasta.nr -Q fj13058.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj13058, 140 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842890 sequences Expectation_n fit: rho(ln(x))= 4.3756+/-0.000179; mu= 9.4425+/- 0.010 mean_var=53.8527+/-10.387, 0's: 37 Z-trim: 37 B-trim: 0 in 0/66 Lambda= 0.174771 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088026|dbj|BAD92460.1| androgen-regulated sho ( 140) 978 253.9 5.1e-66 >>gi|62088026|dbj|BAD92460.1| androgen-regulated short-c (140 aa) initn: 978 init1: 978 opt: 978 Z-score: 1340.4 bits: 253.9 E(): 5.1e-66 Smith-Waterman score: 978; 100.000% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 fj1305 LLCSQFSSSQPTSLHFKRATLQPQLNMNNKDWLRSRACPGMVDHRRSVVQDQPGQHGETP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLCSQFSSSQPTSLHFKRATLQPQLNMNNKDWLRSRACPGMVDHRRSVVQDQPGQHGETP 10 20 30 40 50 60 70 80 90 100 110 120 fj1305 PLLKIVYIFVCLPVYVCQGSIFTKFKTATIIRDGANQCHPVFMQMKCCKGKQILYMLVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PLLKIVYIFVCLPVYVCQGSIFTKFKTATIIRDGANQCHPVFMQMKCCKGKQILYMLVTT 70 80 90 100 110 120 130 140 fj1305 HQEHMGSREEVKKEKENTGR :::::::::::::::::::: gi|620 HQEHMGSREEVKKEKENTGR 130 140 140 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 12:59:09 2008 done: Sun Aug 10 13:02:14 2008 Total Scan time: 551.080 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]