# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj13059.fasta.nr -Q fj13059.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj13059, 901 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6829376 sequences Expectation_n fit: rho(ln(x))= 6.1545+/-0.000203; mu= 10.7224+/- 0.011 mean_var=130.5299+/-24.849, 0's: 34 Z-trim: 66 B-trim: 98 in 1/64 Lambda= 0.112259 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|116242786|sp|Q9H3T3.4|SEM6B_HUMAN Semaphorin-6B ( 888) 6154 1008.6 0 gi|12081907|dbj|BAB20669.1| semaphorin Z [Homo sap ( 888) 6150 1008.0 0 gi|8134709|sp|O54951.1|SEM6B_MOUSE Semaphorin-6B p ( 886) 5422 890.1 0 gi|149028217|gb|EDL83655.1| sema domain, transmemb ( 931) 5410 888.1 0 gi|74141579|dbj|BAE38558.1| unnamed protein produc ( 886) 5409 888.0 0 gi|8134705|sp|O70141.1|SEM6B_RAT Semaphorin-6B pre ( 887) 5393 885.4 0 gi|119929270|ref|XP_605966.3| PREDICTED: similar t ( 845) 5130 842.7 0 gi|119894936|ref|XP_001255402.1| PREDICTED: sema d ( 818) 4942 812.3 0 gi|114674747|ref|XP_001139016.1| PREDICTED: semaph ( 877) 4813 791.4 0 gi|119589612|gb|EAW69206.1| sema domain, transmemb ( 682) 4534 746.1 1e-212 gi|119589613|gb|EAW69207.1| sema domain, transmemb ( 679) 4527 745.0 2.3e-212 gi|13259171|gb|AAK16831.1|AF293363_1 semaphorin 6B ( 687) 4475 736.6 7.9e-210 gi|148691773|gb|EDL23720.1| sema domain, transmemb ( 631) 3796 626.6 9.4e-177 gi|73987373|ref|XP_542153.2| PREDICTED: similar to ( 673) 3548 586.4 1.2e-164 gi|62088136|dbj|BAD92515.1| semaphorin 6B isoform ( 518) 3512 580.5 5.8e-163 gi|194390172|dbj|BAG61848.1| unnamed protein produ ( 535) 3275 542.1 2.1e-151 gi|114674745|ref|XP_001138943.1| PREDICTED: semaph ( 671) 3263 540.3 9.5e-151 gi|119589616|gb|EAW69210.1| sema domain, transmemb ( 517) 3227 534.3 4.5e-149 gi|119589615|gb|EAW69209.1| sema domain, transmemb ( 522) 3223 533.7 7.1e-149 gi|9454055|gb|AAF87661.1|AF216389_1 semaphorin 6B ( 517) 3220 533.2 9.9e-149 gi|189527331|ref|XP_001920254.1| PREDICTED: simila ( 848) 2716 451.8 5.2e-124 gi|114674749|ref|XP_001138863.1| PREDICTED: semaph ( 611) 2678 445.5 3e-122 gi|73970505|ref|XP_859002.1| PREDICTED: similar to ( 975) 2656 442.1 4.8e-121 gi|38566246|gb|AAH62979.1| Sema6a protein [Mus mus ( 976) 2638 439.2 3.6e-120 gi|114601264|ref|XP_001150771.1| PREDICTED: simila ( 975) 2626 437.3 1.4e-119 gi|119569319|gb|EAW48934.1| sema domain, transmemb ( 975) 2625 437.1 1.6e-119 gi|118103192|ref|XP_425890.2| PREDICTED: similar t ( 588) 2602 433.2 1.5e-118 gi|149412934|ref|XP_001513097.1| PREDICTED: simila ( 932) 2449 408.6 5.8e-111 gi|149064211|gb|EDM14414.1| sema domain, transmemb (1031) 2435 406.4 3e-110 gi|26349885|dbj|BAC38582.1| unnamed protein produc ( 587) 2430 405.3 3.5e-110 gi|26335301|dbj|BAC31351.1| unnamed protein produc ( 605) 2430 405.3 3.6e-110 gi|73970497|ref|XP_858843.1| PREDICTED: similar to (1030) 2433 406.0 3.7e-110 gi|73970507|ref|XP_538552.2| PREDICTED: similar to (1047) 2433 406.0 3.8e-110 gi|73970503|ref|XP_858964.1| PREDICTED: similar to (1066) 2433 406.1 3.8e-110 gi|2623162|gb|AAB86408.1| semaphorin VIa [Mus musc ( 888) 2430 405.5 4.7e-110 gi|56405301|sp|O35464.2|SEM6A_MOUSE Semaphorin-6A (1031) 2430 405.6 5.2e-110 gi|76622698|ref|XP_878303.1| PREDICTED: similar to (1029) 2427 405.1 7.3e-110 gi|126333778|ref|XP_001363795.1| PREDICTED: simila (1028) 2417 403.4 2.2e-109 gi|73970501|ref|XP_858921.1| PREDICTED: similar to (1037) 2411 402.5 4.4e-109 gi|114601252|ref|XP_001150971.1| PREDICTED: sema d (1030) 2394 399.7 3e-108 gi|114601250|ref|XP_517889.2| PREDICTED: sema doma (1047) 2394 399.7 3e-108 gi|29839634|sp|Q9H2E6.1|SEM6A_HUMAN Semaphorin-6A (1030) 2393 399.6 3.3e-108 gi|189054769|dbj|BAG37591.1| unnamed protein produ (1030) 2393 399.6 3.3e-108 gi|119569322|gb|EAW48937.1| sema domain, transmemb (1047) 2393 399.6 3.4e-108 gi|118104558|ref|XP_424960.2| PREDICTED: similar t (1027) 2384 398.1 9.1e-108 gi|38197291|gb|AAH61707.1| Zgc:66106 [Danio rerio] ( 968) 2338 390.6 1.5e-105 gi|114601262|ref|XP_001150901.1| PREDICTED: sema d (1022) 2322 388.1 9.6e-105 gi|194219998|ref|XP_001503508.2| PREDICTED: simila ( 600) 2294 383.3 1.5e-103 gi|189522381|ref|XP_687963.3| PREDICTED: similar t ( 615) 2263 378.3 5.1e-102 gi|189522383|ref|XP_001920815.1| PREDICTED: simila ( 954) 2265 378.8 5.5e-102 >>gi|116242786|sp|Q9H3T3.4|SEM6B_HUMAN Semaphorin-6B pre (888 aa) initn: 6154 init1: 6154 opt: 6154 Z-score: 5390.5 bits: 1008.6 E(): 0 Smith-Waterman score: 6154; 100.000% identity (100.000% similar) in 888 aa overlap (14-901:1-888) 10 20 30 40 50 60 fj1305 LRGVTSSCRLALAMQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV ::::::::::::::::::::::::::::::::::::::::::::::: gi|116 MQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV 10 20 30 40 70 80 90 100 110 120 fj1305 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR 50 60 70 80 90 100 130 140 150 160 170 180 fj1305 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN 110 120 130 140 150 160 190 200 210 220 230 240 fj1305 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK 170 180 190 200 210 220 250 260 270 280 290 300 fj1305 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK 230 240 250 260 270 280 310 320 330 340 350 360 fj1305 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV 290 300 310 320 330 340 370 380 390 400 410 420 fj1305 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE 350 360 370 380 390 400 430 440 450 460 470 480 fj1305 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG 410 420 430 440 450 460 490 500 510 520 530 540 fj1305 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ 470 480 490 500 510 520 550 560 570 580 590 600 fj1305 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS 530 540 550 560 570 580 610 620 630 640 650 660 fj1305 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA 590 600 610 620 630 640 670 680 690 700 710 720 fj1305 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL 650 660 670 680 690 700 730 740 750 760 770 780 fj1305 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE 710 720 730 740 750 760 790 800 810 820 830 840 fj1305 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG 770 780 790 800 810 820 850 860 870 880 890 900 fj1305 SLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 SLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPV 830 840 850 860 870 880 fj1305 P : gi|116 P >>gi|12081907|dbj|BAB20669.1| semaphorin Z [Homo sapiens (888 aa) initn: 6150 init1: 6150 opt: 6150 Z-score: 5387.0 bits: 1008.0 E(): 0 Smith-Waterman score: 6150; 99.887% identity (100.000% similar) in 888 aa overlap (14-901:1-888) 10 20 30 40 50 60 fj1305 LRGVTSSCRLALAMQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV :::::::::::::::::::::::::::::.::::::::::::::::: gi|120 MQTPRASPPRPALLLLLLLLGGAHGLFPEDPPPLSVAPRDYLNHYPV 10 20 30 40 70 80 90 100 110 120 fj1305 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR 50 60 70 80 90 100 130 140 150 160 170 180 fj1305 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN 110 120 130 140 150 160 190 200 210 220 230 240 fj1305 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK 170 180 190 200 210 220 250 260 270 280 290 300 fj1305 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK 230 240 250 260 270 280 310 320 330 340 350 360 fj1305 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV 290 300 310 320 330 340 370 380 390 400 410 420 fj1305 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE 350 360 370 380 390 400 430 440 450 460 470 480 fj1305 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG 410 420 430 440 450 460 490 500 510 520 530 540 fj1305 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ 470 480 490 500 510 520 550 560 570 580 590 600 fj1305 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS 530 540 550 560 570 580 610 620 630 640 650 660 fj1305 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA 590 600 610 620 630 640 670 680 690 700 710 720 fj1305 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL 650 660 670 680 690 700 730 740 750 760 770 780 fj1305 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE 710 720 730 740 750 760 790 800 810 820 830 840 fj1305 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG 770 780 790 800 810 820 850 860 870 880 890 900 fj1305 SLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 SLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPV 830 840 850 860 870 880 fj1305 P : gi|120 P >>gi|8134709|sp|O54951.1|SEM6B_MOUSE Semaphorin-6B precu (886 aa) initn: 5244 init1: 3739 opt: 5422 Z-score: 4749.8 bits: 890.1 E(): 0 Smith-Waterman score: 5422; 89.226% identity (95.398% similar) in 891 aa overlap (14-901:1-886) 10 20 30 40 50 fj1305 LRGVTSSCRLALAMQTPRASPPRPAL-LLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYP : :::. :::::: ..:::::: ..::::::::::::::::::.::: gi|813 MWTPRVPPPRPALSFFLLLLLGVTYGLFPEEPPPLSVAPRDYLSHYP 10 20 30 40 60 70 80 90 100 110 fj1305 VFVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTW ::::::::::: ::::.:::::::::::::::::::::::.::::: ::::::::::::: gi|813 VFVGSGPGRLTAAEGAEDLNIQRVLRVNRTLFIGDRDNLYQVELEPSTSTELRYQRKLTW 50 60 70 80 90 100 120 130 140 150 160 170 fj1305 RSNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGD :::::::.:::::::::::::::::::::::::::::::::::::.:::::.:::: .:: gi|813 RSNPSDIDVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPICANYSMDTLQLLGD 110 120 130 140 150 160 180 190 200 210 220 230 fj1305 NISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWF .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 SISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWF 170 180 190 200 210 220 240 250 260 270 280 290 fj1305 KEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 KEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFL 230 240 250 260 270 280 300 310 320 330 340 350 fj1305 KARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAA :::::::::::::::::::::::::::::::::.::::::::::::::::::::..:::: gi|813 KARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAA 290 300 310 320 330 340 360 370 380 390 400 410 fj1305 VFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMD :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|813 VFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDEILNFVKTHPLMD 350 360 370 380 390 400 420 430 440 450 460 470 fj1305 EAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTS ::::::::.:::.::::::::::::::::::::::::.:::::::::::::::.::::.: gi|813 EAVPSLGHSPWIVRTLMRHQLTRVAVDVGAGPWGNQTIVFLGSEAGTVLKFLVKPNASVS 410 420 430 440 450 460 480 490 500 510 520 530 fj1305 GTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLAAFPRCVVRVPVAR ::.: :.::::::::::::::::.. :: ::::::::::::::::::::::::::::::: gi|813 GTTGPSIFLEEFETYRPDRCGRPSSAGEWGQRLLSLELDAASGGLLAAFPRCVVRVPVAR 470 480 490 500 510 520 540 550 560 570 580 590 fj1305 CQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRAS :: ::::::::::::::::::::::::::: ::: :.::::::::::::::::::::::: gi|813 CQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGASTSGLGDCTGLLRAS 530 540 550 560 570 580 600 610 620 630 640 650 fj1305 LSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAG ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::.. gi|813 LSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGGS 590 600 610 620 630 640 660 670 680 690 700 710 fj1305 EAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSG :::::::::::::. :::::::.::: .: ::::::::::::::.::.::.:::::::.: gi|813 EAVLSVSRLGERRGTGPGGRGGAGGGPGG-PPEALLAPLMQNGWTKAALLHGGPHDLDTG 650 660 670 680 690 700 720 730 740 750 760 770 fj1305 LLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAP ::::::::::::::::::::: :::: :::::.: :: ::::.:::::::::: ::: .: gi|813 LLPTPEQTPLPQKRLPTPHPHAHALGSRAWDHSHALLSASASTSLLLLAPARASEQPQVP 710 720 730 740 750 760 780 790 800 810 820 830 fj1305 GEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPP .:: :..:: : : :::: :::::::::::::::::::::::::: :..:::: ::::: gi|813 AEPGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDP-SVGDGLPGPWSPP 770 780 790 800 810 820 840 850 860 870 880 890 fj1305 PTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTA :.::::: :::.::.:.::::::::::::::: :: . .: .: .:::: : ..::: gi|813 ATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRP-RRHPPADSTHLLPCGTGERTA 830 840 850 860 870 880 900 fj1305 PPVP :::: gi|813 PPVP >>gi|149028217|gb|EDL83655.1| sema domain, transmembrane (931 aa) initn: 3838 init1: 3760 opt: 5410 Z-score: 4739.0 bits: 888.1 E(): 0 Smith-Waterman score: 5410; 88.274% identity (94.580% similar) in 904 aa overlap (1-901:33-931) 10 20 fj1305 LRGVTSSCRLALAMQTPRASPPRPALL-LL : ::: . .:.:.: :::: ::::::: :: gi|149 LFLFWRKRGTRAPPNGLLWNCRKLHSLAFWLVGVTCG-HLVLTMWTPRAPPPRPALLFLL 10 20 30 40 50 60 30 40 50 60 70 80 fj1305 LLLLGGAHGLFPEEPPPLSVAPRDYLNHYPVFVGSGPGRLTPAEGADDLNIQRVLRVNRT :::: .:::::.:::::::::::::.:::::::::::::::::::.::::::::::::: gi|149 LLLLRVTHGLFPDEPPPLSVAPRDYLSHYPVFVGSGPGRLTPAEGAEDLNIQRVLRVNRT 70 80 90 100 110 120 90 100 110 120 130 140 fj1305 LFIGDRDNLYRVELEPPTSTELRYQRKLTWRSNPSDINVCRMKGKQEGECRNFVKVLLLR ::::::::::.::::: ::::::::::::::::::::.:::::::::::::::::::::: gi|149 LFIGDRDNLYQVELEPSTSTELRYQRKLTWRSNPSDIDVCRMKGKQEGECRNFVKVLLLR 130 140 150 160 170 180 150 160 170 180 190 200 fj1305 DESTLFVCGSNAFNPVCANYSIDTLQPVGDNISGMARCPYDPKHANVALFSDGMLFTATV :::::::::::::::.:::::.:::: .:::::::::::::::::::::::::::::::: gi|149 DESTLFVCGSNAFNPICANYSMDTLQLLGDNISGMARCPYDPKHANVALFSDGMLFTATV 190 200 210 220 230 240 210 220 230 240 250 260 fj1305 TDFLAIDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TDFLAIDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLE 250 260 270 280 290 300 270 280 290 300 310 320 fj1305 KVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSLGG 310 320 330 340 350 360 330 340 350 360 370 380 fj1305 RPVVLAVFSTPSNSIPGSAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPG :::.::::::::::::::::::::..:::::::::::::::::::::::::::::::::: gi|149 RPVILAVFSTPSNSIPGSAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPG 370 380 390 400 410 420 390 400 410 420 430 440 fj1305 CCAAPGMQYNASSALPDDILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGA ::::::::::::.::::.::::::::::::::::::::.:::.:::.::::::::::::: gi|149 CCAAPGMQYNASNALPDEILNFVKTHPLMDEAVPSLGHSPWIVRTLIRHQLTRVAVDVGA 430 440 450 460 470 480 450 460 470 480 490 500 fj1305 GPWGNQTVVFLGSEAGTVLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGG-GETG :::::::.::::::.::::::::.::::.:::.: :.::::::::::::::: .. :: : gi|149 GPWGNQTIVFLGSEVGTVLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRSSSAGEWG 490 500 510 520 530 540 510 520 530 540 550 560 fj1305 QRLLSLELDAASGGLLAAFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFL :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|149 QRLLSLELDAASGGLLAAFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFL 550 560 570 580 590 600 570 580 590 600 610 620 fj1305 SPGTRAAFEQDVSGASTSGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSG ::: :.:::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|149 RPGTSATFEQDVSGASTSGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSG 610 620 630 640 650 660 630 640 650 660 670 680 fj1305 FSVGWFVGLRERRELARRKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGV ::::::::::::::::::::::::::::..:::::::::::::. : :::::.::: .: gi|149 FSVGWFVGLRERRELARRKDKEAILAHGGSEAVLSVSRLGERRGTGTGGRGGAGGGPGG- 670 680 690 700 710 720 690 700 710 720 730 740 fj1305 PPEALLAPLMQNGWAKATLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAW ::::::::::::::.::.::.:::::::::::::::::::::::::: ::: :::::::: gi|149 PPEALLAPLMQNGWTKAALLHGGPHDLDSGLLPTPEQTPLPQKRLPTTHPHAHALGPRAW 730 740 750 760 770 780 750 760 770 780 790 800 fj1305 DHGHPLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGRASH-GDFPLTPHAS ::.: :: ::::.:::::: .:::::::.: : :..:: : : :::: :::::::::: gi|149 DHSHALLSASASTSLLLLAHTRAPEQPPVPTESGPESRLCAPRSCRASHPGDFPLTPHAS 790 800 810 820 830 840 810 820 830 840 850 860 fj1305 PDRRRVVSAPTGPLDPASAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEA ::::::::::::::: .:..: :: ::::: :.::::: :::.::.:.:::::::::::: gi|149 PDRRRVVSAPTGPLDSSSVGDDLPGPWSPPATSSLRRP-GPHGPPTAALRRTHTFNSGEA 850 860 870 880 890 870 880 890 900 fj1305 RPGDRHRGCHARPGTDLAHLLPYGGADRTAPPVP ::: :: . :. : .:::: : ..::::::: gi|149 RPGG-HRPRRHAPA-DSTHLLPCGTGERTAPPVP 900 910 920 930 >>gi|74141579|dbj|BAE38558.1| unnamed protein product [M (886 aa) initn: 5231 init1: 3726 opt: 5409 Z-score: 4738.4 bits: 888.0 E(): 0 Smith-Waterman score: 5409; 89.113% identity (95.286% similar) in 891 aa overlap (14-901:1-886) 10 20 30 40 50 fj1305 LRGVTSSCRLALAMQTPRASPPRPAL-LLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYP : :::. :::::: ..:::::: ..::::::::::::::::::.:: gi|741 MWTPRVPPPRPALSFFLLLLLGVTYGLFPEEPPPLSVAPRDYLSHYR 10 20 30 40 60 70 80 90 100 110 fj1305 VFVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTW ::::::::::: ::::.:::::::::::::::::::::::.::::: ::::::::::::: gi|741 VFVGSGPGRLTAAEGAEDLNIQRVLRVNRTLFIGDRDNLYQVELEPSTSTELRYQRKLTW 50 60 70 80 90 100 120 130 140 150 160 170 fj1305 RSNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGD :::::::.:::::::::::::::::::::::::::::::::::::.:::::.:::: .:: gi|741 RSNPSDIDVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPICANYSMDTLQLLGD 110 120 130 140 150 160 180 190 200 210 220 230 fj1305 NISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWF .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWF 170 180 190 200 210 220 240 250 260 270 280 290 fj1305 KEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFL 230 240 250 260 270 280 300 310 320 330 340 350 fj1305 KARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAA :::::::::::::::::::::::::::::::::.::::::::::::::::::::..:::: gi|741 KARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAA 290 300 310 320 330 340 360 370 380 390 400 410 fj1305 VFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMD :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|741 VFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDEILNFVKTHPLMD 350 360 370 380 390 400 420 430 440 450 460 470 fj1305 EAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTS ::::::::.:::.::::::::::::::::::::::::.:::::::::::::::.::::.: gi|741 EAVPSLGHSPWIVRTLMRHQLTRVAVDVGAGPWGNQTIVFLGSEAGTVLKFLVKPNASVS 410 420 430 440 450 460 480 490 500 510 520 530 fj1305 GTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLAAFPRCVVRVPVAR ::.: :.::::::::::::::::.. :: ::::::::::::::::::::::::::::::: gi|741 GTTGPSIFLEEFETYRPDRCGRPSSAGEWGQRLLSLELDAASGGLLAAFPRCVVRVPVAR 470 480 490 500 510 520 540 550 560 570 580 590 fj1305 CQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRAS :: ::::::::::::::::::::::::::: ::: :.::::::::::::::::::::::: gi|741 CQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGASTSGLGDCTGLLRAS 530 540 550 560 570 580 600 610 620 630 640 650 fj1305 LSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAG ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::.. gi|741 LSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGGS 590 600 610 620 630 640 660 670 680 690 700 710 fj1305 EAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSG :::::::::::::. :::::::.::: .: ::::::::::::::.::.::.:::::::.: gi|741 EAVLSVSRLGERRGTGPGGRGGAGGGPGG-PPEALLAPLMQNGWTKAALLHGGPHDLDTG 650 660 670 680 690 700 720 730 740 750 760 770 fj1305 LLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAP ::::::::::::::::::::: :::: :::::.: :: ::::.:::::::::: ::: .: gi|741 LLPTPEQTPLPQKRLPTPHPHAHALGSRAWDHSHALLSASASTSLLLLAPARASEQPQVP 710 720 730 740 750 760 780 790 800 810 820 830 fj1305 GEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPP .:: :..:: : : :::: :::::::::::::::::::::::::: :..:::: ::::: gi|741 AEPGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDP-SVGDGLPGPWSPP 770 780 790 800 810 820 840 850 860 870 880 890 fj1305 PTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTA :.::::: :::.::.:.::::::::::::::: :: . .: .: .:::: : ..::: gi|741 ATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRP-RRHPPADSTHLLPCGTGERTA 830 840 850 860 870 880 900 fj1305 PPVP :::: gi|741 PPVP >>gi|8134705|sp|O70141.1|SEM6B_RAT Semaphorin-6B precurs (887 aa) initn: 3837 init1: 3759 opt: 5393 Z-score: 4724.4 bits: 885.4 E(): 0 Smith-Waterman score: 5393; 88.889% identity (94.837% similar) in 891 aa overlap (14-901:1-887) 10 20 30 40 50 fj1305 LRGVTSSCRLALAMQTPRASPPRPALL-LLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYP : :::: ::::::: :::::: .:::::.:::::::::::::.::: gi|813 MWTPRAPPPRPALLFLLLLLLRVTHGLFPDEPPPLSVAPRDYLSHYP 10 20 30 40 60 70 80 90 100 110 fj1305 VFVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTW ::::::::::::::::.:::::::::::::::::::::::.::::: ::::::::::::: gi|813 VFVGSGPGRLTPAEGAEDLNIQRVLRVNRTLFIGDRDNLYQVELEPSTSTELRYQRKLTW 50 60 70 80 90 100 120 130 140 150 160 170 fj1305 RSNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGD :::::::.:::::::::::::::::::::::::::::::::::::.:::::.:::: .:: gi|813 RSNPSDIDVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPICANYSMDTLQLLGD 110 120 130 140 150 160 180 190 200 210 220 230 fj1305 NISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 NISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWF 170 180 190 200 210 220 240 250 260 270 280 290 fj1305 KEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|813 KEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFL 230 240 250 260 270 280 300 310 320 330 340 350 fj1305 KARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAA :::::::::::::::::::::::::::::::::.::::::::::::::::::::..:::: gi|813 KARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAA 290 300 310 320 330 340 360 370 380 390 400 410 fj1305 VFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMD ::::::::::::::::::::::::::::::::::::::::::.::::.:::::::::::: gi|813 VFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASNALPDEILNFVKTHPLMD 350 360 370 380 390 400 420 430 440 450 460 470 fj1305 EAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTS ::::::::.:::.:::.::::::::::::::::::::.::::::.::::::::.::::.: gi|813 EAVPSLGHSPWIVRTLIRHQLTRVAVDVGAGPWGNQTIVFLGSEVGTVLKFLVKPNASVS 410 420 430 440 450 460 480 490 500 510 520 530 fj1305 GTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLAAFPRCVVRVPVAR ::.: :.::::::::::::::: .. :: ::::::::::::::::::::::::::::::: gi|813 GTTGPSIFLEEFETYRPDRCGRSSSAGEWGQRLLSLELDAASGGLLAAFPRCVVRVPVAR 470 480 490 500 510 520 540 550 560 570 580 590 fj1305 CQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRAS :: ::::::::::::::::::::::::::: ::: :.::::::::::::::::::::::: gi|813 CQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGASTSGLGDCTGLLRAS 530 540 550 560 570 580 600 610 620 630 640 650 fj1305 LSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAG ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::.. gi|813 LSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGGS 590 600 610 620 630 640 660 670 680 690 700 710 fj1305 EAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSG :::::::::::::. : :::::.::: .: ::::::::::::::.::.::.::::::::: gi|813 EAVLSVSRLGERRGTGTGGRGGAGGGPGG-PPEALLAPLMQNGWTKAALLHGGPHDLDSG 650 660 670 680 690 700 720 730 740 750 760 770 fj1305 LLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAP ::::::::::::::::: ::: ::::::::::.: :: ::::.:::::: .:::::::.: gi|813 LLPTPEQTPLPQKRLPTTHPHAHALGPRAWDHSHALLSASASTSLLLLAHTRAPEQPPVP 710 720 730 740 750 760 780 790 800 810 820 830 fj1305 GEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPP : :..:: : : :::: ::::::::::::::::::::::::: .:..: :: ::::: gi|813 TESGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDSSSVGDDLPGPWSPP 770 780 790 800 810 820 840 850 860 870 880 890 fj1305 PTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTA :.::::: :::.::.:.::::::::::::::: :: . :. : .:::: : ..::: gi|813 ATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRPRRHAPA-DSTHLLPCGTGERTA 830 840 850 860 870 880 900 fj1305 PPVP :::: gi|813 PPVP >>gi|119929270|ref|XP_605966.3| PREDICTED: similar to Se (845 aa) initn: 4984 init1: 4763 opt: 5130 Z-score: 4494.5 bits: 842.7 E(): 0 Smith-Waterman score: 5130; 93.358% identity (97.368% similar) in 798 aa overlap (14-810:1-796) 10 20 30 40 50 60 fj1305 LRGVTSSCRLALAMQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV :.:::. : :::::::::::::::::::::::::::::::::::::: gi|119 MRTPRGPPSRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV 10 20 30 40 70 80 90 100 110 120 fj1305 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR :::::::::::.: ::::::::::::::::::: ::::::::::::::::.::::::::: gi|119 FVGSGPGRLTPSEDADDLNIQRVLRVNRTLFIGGRDNLYRVELEPPTSTEMRYQRKLTWR 50 60 70 80 90 100 130 140 150 160 170 180 fj1305 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::. :: gi|119 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSMDTLQPLRDN 110 120 130 140 150 160 190 200 210 220 230 240 fj1305 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|119 ISGMARCPYDPKHANVALFSEGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK 170 180 190 200 210 220 250 260 270 280 290 300 fj1305 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK :::::::::::::.:::::::::::::::::::::::::::::.:::::::::::::::: gi|119 EPYFVHAVEWGSHIYFFFREIAMEFNYLEKVVVSRVARVCKNDMGGSPRVLEKQWTSFLK 230 240 250 260 270 280 310 320 330 340 350 360 fj1305 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|119 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDMTQVAAV 290 300 310 320 330 340 370 380 390 400 410 420 fj1305 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE :::::::::::::::::::::::::::::::::::::::::::.::.::::::::::::: gi|119 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSAFPDEILNFVKTHPLMDE 350 360 370 380 390 400 430 440 450 460 470 480 fj1305 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG :::::::::::.:::::::::::::::::::::::::.:::::::::::::: ::::.:: gi|119 AVPSLGHAPWIVRTLMRHQLTRVAVDVGAGPWGNQTVIFLGSEAGTVLKFLVWPNASASG 410 420 430 440 450 460 490 500 510 520 530 540 fj1305 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ :.: ::::::::::::::::: : :::::::::::::::::::::::::::::::::::: gi|119 TTGPSVFLEEFETYRPDRCGRSGDGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ 470 480 490 500 510 520 550 560 570 580 590 600 fj1305 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS :::::::::::::::::::::::::.::::::::.:::::::.::::::::::::::::: gi|119 QYSGCMKNCIGSQDPYCGWAPDGSCVFLSPGTRATFEQDVSGTSTSGLGDCTGLLRASLS 530 540 550 560 570 580 610 620 630 640 650 660 fj1305 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA :.:::::::::::::::::::::::::::::::.::::::::::::::::::::::.::: gi|119 EERAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWYVGLRERRELARRKDKEAILAHGGGEA 590 600 610 620 630 640 670 680 690 700 710 720 fj1305 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL :::::::::::: :::::.:::::: : ::::::::::::::.::::::::::::::::: gi|119 VLSVSRLGERRAGGPGGRAGGGGGGPGGPPEALLAPLMQNGWTKATLLQGGPHDLDSGLL 650 660 670 680 690 700 730 740 750 760 770 780 fj1305 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE ::::::::::::::::::: .::::::.:: :: ::::::::::::.:::: :::::: gi|119 PTPEQTPLPQKRLPTPHPH--TLGPRAWEHGPALLTASASSSLLLLAPGRAPEPPPAPGE 710 720 730 740 750 760 790 800 810 820 830 fj1305 PT-PDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPT :. ::.::..:::::::::::::::::. : gi|119 PAAPDARLFTARPGRASHGDFPLTPHAAAPRLGGASHGNQEREPGASSQVCVVCSLHPRM 770 780 790 800 810 820 840 850 860 870 880 890 fj1305 GSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPP gi|119 ADPGSDTCTFNYRRKESGRI 830 840 >>gi|119894936|ref|XP_001255402.1| PREDICTED: sema domai (818 aa) initn: 4763 init1: 4763 opt: 4942 Z-score: 4330.1 bits: 812.3 E(): 0 Smith-Waterman score: 4942; 94.110% identity (97.644% similar) in 764 aa overlap (14-777:1-762) 10 20 30 40 50 60 fj1305 LRGVTSSCRLALAMQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV :.:::. : :::::::::::::::::::::::::::::::::::::: gi|119 MRTPRGPPSRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV 10 20 30 40 70 80 90 100 110 120 fj1305 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR :::::::::::.: ::::::::::::::::::: ::::::::::::::::.::::::::: gi|119 FVGSGPGRLTPSEDADDLNIQRVLRVNRTLFIGGRDNLYRVELEPPTSTEMRYQRKLTWR 50 60 70 80 90 100 130 140 150 160 170 180 fj1305 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::. :: gi|119 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSMDTLQPLRDN 110 120 130 140 150 160 190 200 210 220 230 240 fj1305 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|119 ISGMARCPYDPKHANVALFSEGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK 170 180 190 200 210 220 250 260 270 280 290 300 fj1305 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK :::::::::::::.:::::::::::::::::::::::::::::.:::::::::::::::: gi|119 EPYFVHAVEWGSHIYFFFREIAMEFNYLEKVVVSRVARVCKNDMGGSPRVLEKQWTSFLK 230 240 250 260 270 280 310 320 330 340 350 360 fj1305 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|119 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDMTQVAAV 290 300 310 320 330 340 370 380 390 400 410 420 fj1305 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE :::::::::::::::::::::::::::::::::::::::::::.::.::::::::::::: gi|119 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSAFPDEILNFVKTHPLMDE 350 360 370 380 390 400 430 440 450 460 470 480 fj1305 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG :::::::::::.:::::::::::::::::::::::::.:::::::::::::: ::::.:: gi|119 AVPSLGHAPWIVRTLMRHQLTRVAVDVGAGPWGNQTVIFLGSEAGTVLKFLVWPNASASG 410 420 430 440 450 460 490 500 510 520 530 540 fj1305 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ :.: ::::::::::::::::: : :::::::::::::::::::::::::::::::::::: gi|119 TTGPSVFLEEFETYRPDRCGRSGDGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ 470 480 490 500 510 520 550 560 570 580 590 600 fj1305 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS :::::::::::::::::::::::::.::::::::.:::::::.::::::::::::::::: gi|119 QYSGCMKNCIGSQDPYCGWAPDGSCVFLSPGTRATFEQDVSGTSTSGLGDCTGLLRASLS 530 540 550 560 570 580 610 620 630 640 650 660 fj1305 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA :.:::::::::::::::::::::::::::::::.::::::::::::::::::::::.::: gi|119 EERAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWYVGLRERRELARRKDKEAILAHGGGEA 590 600 610 620 630 640 670 680 690 700 710 720 fj1305 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL :::::::::::: :::::.:::::: : ::::::::::::::.::::::::::::::::: gi|119 VLSVSRLGERRAGGPGGRAGGGGGGPGGPPEALLAPLMQNGWTKATLLQGGPHDLDSGLL 650 660 670 680 690 700 730 740 750 760 770 780 fj1305 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE ::::::::::::::::::: .::::::.:: :: ::::::::::::.:::: ::: gi|119 PTPEQTPLPQKRLPTPHPH--TLGPRAWEHGPALLTASASSSLLLLAPGRAPEPPPALLL 710 720 730 740 750 760 790 800 810 820 830 840 fj1305 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG gi|119 RVCGDGHAQCACLCVSAEVPAAWALAEPTPGLPEGRGPPMCRLGVRGEVRQGF 770 780 790 800 810 >>gi|114674747|ref|XP_001139016.1| PREDICTED: semaphorin (877 aa) initn: 5678 init1: 4367 opt: 4813 Z-score: 4216.8 bits: 791.4 E(): 0 Smith-Waterman score: 5657; 93.131% identity (95.721% similar) in 888 aa overlap (14-901:1-877) 10 20 30 40 50 60 fj1305 LRGVTSSCRLALAMQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV ::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV 10 20 30 40 70 80 90 100 110 120 fj1305 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR 50 60 70 80 90 100 130 140 150 160 170 180 fj1305 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN :::::::::::::::: ::.. : .: :.: . . . . .:::::::::: gi|114 SNPSDINVCRMKGKQEVSCRSY-----LGNEPGLLVGVRRSVTQAPWSLQIDTLQPVGDN 110 120 130 140 150 160 190 200 210 220 230 240 fj1305 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK :::::::::::::::::::::::::::::::::::::::.::.::::::::::::::::: gi|114 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIFRSFGDRPTLRTVKHDSKWFK 170 180 190 200 210 220 250 260 270 280 290 300 fj1305 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK :. : ... : ... . .:::::::::::::::::::::::::::::: gi|114 VAQPVNRPSWDTEL----RPPSVHCH--TQVVVSRVARVCKNDVGGSPRVLEKQWTSFLK 230 240 250 260 270 310 320 330 340 350 360 fj1305 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV 280 290 300 310 320 330 370 380 390 400 410 420 fj1305 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE 340 350 360 370 380 390 430 440 450 460 470 480 fj1305 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVPSLGHAPWIVRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG 400 410 420 430 440 450 490 500 510 520 530 540 fj1305 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ 460 470 480 490 500 510 550 560 570 580 590 600 fj1305 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS 520 530 540 550 560 570 610 620 630 640 650 660 fj1305 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA 580 590 600 610 620 630 670 680 690 700 710 720 fj1305 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL 640 650 660 670 680 690 730 740 750 760 770 780 fj1305 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGE 700 710 720 730 740 750 790 800 810 820 830 840 fj1305 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTG 760 770 780 790 800 810 850 860 870 880 890 900 fj1305 SLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPV ::::: ::::::::::::::::::::::::::::::::::::.:::.::::::::::::: gi|114 SLRRPPGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTELAHILPYGGADRTAPPV 820 830 840 850 860 870 fj1305 P : gi|114 P >>gi|119589612|gb|EAW69206.1| sema domain, transmembrane (682 aa) initn: 4526 init1: 4526 opt: 4534 Z-score: 3974.0 bits: 746.1 E(): 1e-212 Smith-Waterman score: 4534; 98.817% identity (98.965% similar) in 676 aa overlap (14-689:1-676) 10 20 30 40 50 60 fj1305 LRGVTSSCRLALAMQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPV 10 20 30 40 70 80 90 100 110 120 fj1305 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FVGSGPGRLTPAEGADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWR 50 60 70 80 90 100 130 140 150 160 170 180 fj1305 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SNPSDINVCRMKGKQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDN 110 120 130 140 150 160 190 200 210 220 230 240 fj1305 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ISGMARCPYDPKHANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFK 170 180 190 200 210 220 250 260 270 280 290 300 fj1305 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLK 230 240 250 260 270 280 310 320 330 340 350 360 fj1305 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAV 290 300 310 320 330 340 370 380 390 400 410 420 fj1305 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDILNFVKTHPLMDE 350 360 370 380 390 400 430 440 450 460 470 480 fj1305 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSG 410 420 430 440 450 460 490 500 510 520 530 540 fj1305 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQ 470 480 490 500 510 520 550 560 570 580 590 600 fj1305 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLS 530 540 550 560 570 580 610 620 630 640 650 660 fj1305 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEA 590 600 610 620 630 640 670 680 690 700 710 720 fj1305 VLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLL :::::::::::::::::: : . : : gi|119 VLSVSRLGERRAQGPGGRRWGFQKARGSPRCRLGV 650 660 670 680 901 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 13:05:16 2008 done: Sun Aug 10 13:07:18 2008 Total Scan time: 1043.330 Total Display time: 0.480 Function used was FASTA [version 34.26.5 April 26, 2007]