hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13072023/chunk_1/iprscan-20080810-13072023.nocrc
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Query sequence: fj13059
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01403.10.fs Sema domain                                    512.4   4.8e-151   1
PF01403.10.ls Sema domain                                    511.6   7.9e-151   1
PF01437.15.fs Plexin repeat                                   35.5      5e-11   1
PF01437.15.ls Plexin repeat                                   37.3      5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01403.10.fs   1/1      78   502 ..     1   480 [.   512.4 4.8e-151
PF01403.10.ls   1/1      78   517 ..     1   490 []   511.6 7.9e-151
PF01437.15.fs   1/1     538   588 ..     1    63 []    35.5    5e-11
PF01437.15.ls   1/1     538   588 ..     1    63 []    37.3    5e-08

Alignments of top-scoring domains:
PF01403.10.fs: domain 1 of 1, from 78 to 502: score 512.4, E = 4.8e-151
                   *->frtllldedrgrLyVGArNhvyvLnledls...erlqqkigWpsspg
                      ++++ + + +++L++G r+ +y++ le   ++++r q k++W s+  
     fj13059    78    LNIQRVLRVNRTLFIGDRDNLYRVELEPPTsteLRYQRKLTWRSN-- 122  

                   eekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl
                   + +++ C mkGk     e eC Nf++VL+  +++ L+vCG+naF+PvC  
     fj13059   123 PSDINVCRMKGKQ----EGECRNFVKVLLLRDESTLFVCGSNAFNPVCAN 168  

                   inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt
                   + +++             + + v+ ++sG++rCPydP+h++++++  +  
     fj13059   169 YSIDT-------------LQP-VGDNISGMARCPYDPKHANVALFS-D-- 201  

                   geLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV
                   g+L+++tv+D      F+ +d++I+Rslg+++ lrT +hdskw +eP+FV
     fj13059   202 GMLFTATVTD------FLAIDAVIYRSLGDRPTLRTVKHDSKWFKEPYFV 245  

                   dsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr
                   +++  +        +VYFFFrE+a e++   +k+++sRVaRvCknDvGG 
     fj13059   246 HAVEWG-------SHVYFFFREIAMEFN-YLEKVVVSRVARVCKNDVGGS 287  

                   rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL
                    ++ +++WT+FLKARLnCSvpG ++  +fyFN+LQav    +   l+   
     fj13059   288 PRVLEKQWTSFLKARLNCSVPG-DS--HFYFNVLQAVTGVVS---LG--- 328  

                   gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs
                         pv+ +VF+t+snsi+g    SAVCaF + ++++vF +G f++q 
     fj13059   329 ----GRPVVLAVFSTPSNSIPG----SAVCAFDLTQVAAVF-EGRFREQ- 368  

                   sEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh
                    ++p s w+p++  +vP PRPG+C+ +     y  +  lPDd lnf+k+h
     fj13059   369 -KSPESIWTPVPEDQVPRPRPGCCAAPGM--QYNASSALPDDILNFVKTH 415  

                   pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd
                   pLmde+vp+l  +P+  +t+ + +lT +aVd  V ag   + tV+FlG +
     fj13059   416 PLMDEAVPSLGHAPWILRTLMRHQLTRVAVD--VGAGPWGNQTVVFLGSE 463  

                   dGtvlKkvvvlsrsss..syeevvleelqvfkdpri.eP<-*
                    GtvlK++v+   s s++s ++v+lee + +++ r++ P   
     fj13059   464 AGTVLKFLVRPNASTSgtSGLSVFLEEFETYRPDRCgRP    502  

PF01403.10.ls: domain 1 of 1, from 78 to 517: score 511.6, E = 7.9e-151
                   *->frtllldedrgrLyVGArNhvyvLnledls...erlqqkigWpsspg
                      ++++ + + +++L++G r+ +y++ le   ++++r q k++W s+  
     fj13059    78    LNIQRVLRVNRTLFIGDRDNLYRVELEPPTsteLRYQRKLTWRSN-- 122  

                   eekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl
                   + +++ C mkGk     e eC Nf++VL+  +++ L+vCG+naF+PvC  
     fj13059   123 PSDINVCRMKGKQ----EGECRNFVKVLLLRDESTLFVCGSNAFNPVCAN 168  

                   inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt
                   + +++             + + v+ ++sG++rCPydP+h++++++  +  
     fj13059   169 YSIDT-------------LQP-VGDNISGMARCPYDPKHANVALFS-D-- 201  

                   geLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV
                   g+L+++tv+D      F+ +d++I+Rslg+++ lrT +hdskw +eP+FV
     fj13059   202 GMLFTATVTD------FLAIDAVIYRSLGDRPTLRTVKHDSKWFKEPYFV 245  

                   dsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr
                   +++  +        +VYFFFrE+a e++   +k+++sRVaRvCknDvGG 
     fj13059   246 HAVEWG-------SHVYFFFREIAMEFN-YLEKVVVSRVARVCKNDVGGS 287  

                   rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL
                    ++ +++WT+FLKARLnCSvpG ++  +fyFN+LQav    +   l+   
     fj13059   288 PRVLEKQWTSFLKARLNCSVPG-DS--HFYFNVLQAVTGVVS---LG--- 328  

                   gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs
                         pv+ +VF+t+snsi+g    SAVCaF + ++++vF +G f++q 
     fj13059   329 ----GRPVVLAVFSTPSNSIPG----SAVCAFDLTQVAAVF-EGRFREQ- 368  

                   sEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh
                    ++p s w+p++  +vP PRPG+C+ +     y  +  lPDd lnf+k+h
     fj13059   369 -KSPESIWTPVPEDQVPRPRPGCCAAPGM--QYNASSALPDDILNFVKTH 415  

                   pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd
                   pLmde+vp+l  +P+  +t+ + +lT +aVd  V ag   + tV+FlG +
     fj13059   416 PLMDEAVPSLGHAPWILRTLMRHQLTRVAVD--VGAGPWGNQTVVFLGSE 463  

                   dGtvlKkvvvlsrsss..syeevvleelqvfkdpri......ePvqnlei
                    GtvlK++v+   s s++s ++v+lee + +++ r+++++++e  q+l+ 
     fj13059   464 AGTVLKFLVRPNASTSgtSGLSVFLEEFETYRPDRCgrpgggETGQRLLS 513  

                   sskq<-*
                   +  +   
     fj13059   514 LELD    517  

PF01437.15.fs: domain 1 of 1, from 538 to 588: score 35.5, E = 5e-11
                   *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfygeCprse
                      +C+qy+ C   C++++dp yCgW ++ g+C+ +s         +r++
     fj13059   538    RCQQYSGCmKNCIGSQDP-YCGWAPD-GSCIFLS-------PGTRAA 575  

                   pendqwldwswssskCp<-*
                         +d s +s       
     fj13059   576 ----FEQDVSGASTSGL    588  

PF01437.15.ls: domain 1 of 1, from 538 to 588: score 37.3, E = 5e-08
                   *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfygeCprse
                      +C+qy+ C   C++++dp yCgW ++ g+C+ +s         +r++
     fj13059   538    RCQQYSGCmKNCIGSQDP-YCGWAPD-GSCIFLS-------PGTRAA 575  

                   pendqwldwswssskCp<-*
                         +d s +s       
     fj13059   576 ----FEQDVSGASTSGL    588  

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