hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-13145877/chunk_1/iprscan-20080810-13145877.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj13109 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 376.3 4.5e-110 13 PF00096.16.fs Zinc finger, C2H2 type 357.8 1.7e-104 13 PF01352.17.fs KRAB box 90.6 4.1e-25 1 PF01352.17.ls KRAB box 92.6 1.1e-24 1 PF01096.9.fs Transcription factor S-II (TFIIS) 74.7 2e-22 12 PF01286.9.fs XPA protein N-terminal 34.0 6.4e-09 9 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 20.4 5.9e-06 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 19 59 .. 1 41 [] 90.6 4.1e-25 PF01352.17.ls 1/1 19 59 .. 1 41 [] 92.6 1.1e-24 PF00096.16.ls 1/13 183 205 .. 1 24 [] 28.6 2e-05 PF00096.16.fs 1/13 183 205 .. 1 24 [] 26.7 2.1e-05 PF00096.16.ls 2/13 211 233 .. 1 24 [] 33.8 5.4e-07 PF00096.16.fs 2/13 211 233 .. 1 24 [] 31.9 1.1e-06 PF00096.16.ls 3/13 239 261 .. 1 24 [] 21.8 0.0023 PF00096.16.ls 4/13 267 289 .. 1 24 [] 35.0 2.5e-07 PF00096.16.fs 4/13 267 289 .. 1 24 [] 33.0 5.7e-07 PF00096.16.ls 5/13 295 317 .. 1 24 [] 20.5 0.0056 PF00096.16.fs 5/13 295 315 .. 1 22 [. 25.6 3.9e-05 PF00096.16.ls 7/13 351 373 .. 1 24 [] 34.1 4.5e-07 PF00096.16.fs 7/13 351 373 .. 1 24 [] 32.1 9.3e-07 PF00096.16.fs 8/13 379 401 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 8/13 379 401 .. 1 24 [] 31.5 2.7e-06 PF00096.16.ls 9/13 407 429 .. 1 24 [] 31.7 2.3e-06 PF00096.16.fs 9/13 407 429 .. 1 24 [] 29.8 3.6e-06 PF00096.16.ls 10/13 435 457 .. 1 24 [] 31.2 3.4e-06 PF00096.16.fs 10/13 435 457 .. 1 24 [] 29.2 5e-06 PF00096.16.ls 11/13 463 485 .. 1 24 [] 29.4 1.2e-05 PF00096.16.fs 11/13 463 485 .. 1 24 [] 27.4 1.4e-05 PF00096.16.fs 12/13 491 513 .. 1 24 [] 29.5 4.2e-06 PF00096.16.ls 12/13 491 513 .. 1 24 [] 31.5 2.8e-06 PF00096.16.fs 13/13 519 541 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 13/13 519 541 .. 1 24 [] 29.8 9.1e-06 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 19 to 59: score 90.6, E = 4.1e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F DV +dF+ EEWe Ld +Q++LYrdVMlENysnLvSlg fj13109 19 VMFSDVSIDFSPEEWEYLDLEQKDLYRDVMLENYSNLVSLG 59 PF01352.17.ls: domain 1 of 1, from 19 to 59: score 92.6, E = 1.1e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F DV +dF+ EEWe Ld +Q++LYrdVMlENysnLvSlg fj13109 19 VMFSDVSIDFSPEEWEYLDLEQKDLYRDVMLENYSNLVSLG 59 PF00096.16.ls: domain 1 of 13, from 183 to 205: score 28.6, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H r+H fj13109 183 YECK-ECGKAFRVRQQLTFHHRIH 205 PF00096.16.fs: domain 1 of 13, from 183 to 205: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H r+H fj13109 183 YECK-ECGKAFRVRQQLTFHHRIH 205 PF00096.16.ls: domain 2 of 13, from 211 to 233: score 33.8, E = 5.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F++ ++L+rH+r H fj13109 211 YECK-ECGMAFRQTAHLTRHQRLH 233 PF00096.16.fs: domain 2 of 13, from 211 to 233: score 31.9, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F++ ++L+rH+r H fj13109 211 YECK-ECGMAFRQTAHLTRHQRLH 233 PF00096.16.ls: domain 3 of 13, from 239 to 261: score 21.8, E = 0.0023 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F ++L+ H+++H fj13109 239 YECK-ECGEAFICGADLRVHQKMH 261 PF00096.16.ls: domain 4 of 13, from 267 to 289: score 35.0, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +++L+ H+r+H fj13109 267 YECK-ECGKAFRVRGQLTLHQRIH 289 PF00096.16.fs: domain 4 of 13, from 267 to 289: score 33.0, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +++L+ H+r+H fj13109 267 YECK-ECGKAFRVRGQLTLHQRIH 289 PF00096.16.ls: domain 5 of 13, from 295 to 317: score 20.5, E = 0.0056 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ ++L+rH++ fj13109 295 YVCK-ECGKAFRQYAHLTRHQKLN 317 PF00096.16.fs: domain 5 of 13, from 295 to 315: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlr<-* y+C+ +Cgk+F++ ++L+rH++ fj13109 295 YVCK-ECGKAFRQYAHLTRHQK 315 PF00096.16.ls: domain 7 of 13, from 351 to 373: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H+r+H fj13109 351 YECK-ECGKAFRVRQQLTLHQRIH 373 PF00096.16.fs: domain 7 of 13, from 351 to 373: score 32.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H+r+H fj13109 351 YECK-ECGKAFRVRQQLTLHQRIH 373 PF00096.16.fs: domain 8 of 13, from 379 to 401: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr ++L H r+H fj13109 379 YECK-ECGKTFSRGYHLILHHRIH 401 PF00096.16.ls: domain 8 of 13, from 379 to 401: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr ++L H r+H fj13109 379 YECK-ECGKTFSRGYHLILHHRIH 401 PF00096.16.ls: domain 9 of 13, from 407 to 429: score 31.7, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fsr s+L +H+ +H fj13109 407 YECK-ECWKAFSRYSQLISHQSIH 429 PF00096.16.fs: domain 9 of 13, from 407 to 429: score 29.8, E = 3.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fsr s+L +H+ +H fj13109 407 YECK-ECWKAFSRYSQLISHQSIH 429 PF00096.16.ls: domain 10 of 13, from 435 to 457: score 31.2, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ s+L++H+ +H fj13109 435 YDCK-ECGKAFRLLSQLTQHQSIH 457 PF00096.16.fs: domain 10 of 13, from 435 to 457: score 29.2, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ s+L++H+ +H fj13109 435 YDCK-ECGKAFRLLSQLTQHQSIH 457 PF00096.16.ls: domain 11 of 13, from 463 to 485: score 29.4, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + L+ H+ +H fj13109 463 YKCK-ECGKAFRLRQKLTLHQSIH 485 PF00096.16.fs: domain 11 of 13, from 463 to 485: score 27.4, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + L+ H+ +H fj13109 463 YKCK-ECGKAFRLRQKLTLHQSIH 485 PF00096.16.fs: domain 12 of 13, from 491 to 513: score 29.5, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F+ +s+L +Hlr+H fj13109 491 FECK-ECRKAFRLNSSLIQHLRIH 513 PF00096.16.ls: domain 12 of 13, from 491 to 513: score 31.5, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F+ +s+L +Hlr+H fj13109 491 FECK-ECRKAFRLNSSLIQHLRIH 513 PF00096.16.fs: domain 13 of 13, from 519 to 541: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++s+L++Hl++H fj13109 519 YECK-ECKKAFRQHSHLTHHLKIH 541 PF00096.16.ls: domain 13 of 13, from 519 to 541: score 29.8, E = 9.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F+++s+L++Hl++H fj13109 519 YECK-ECKKAFRQHSHLTHHLKIH 541 //