hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13145877/chunk_1/iprscan-20080810-13145877.nocrc
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Query sequence: fj13109
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 322.2    3.6e-92  13
SM00349                                                 136.5    2.8e-36   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      19    79 ..     1    62 []   136.5  2.8e-36
SM00355      1/13    183   205 ..     1    23 []    24.3    0.017
SM00355      2/13    211   233 ..     1    23 []    27.4   0.0019
SM00355      3/13    239   261 ..     1    23 []    23.3    0.033
SM00355      4/13    267   289 ..     1    23 []    29.9  0.00036
SM00355      5/13    295   315 ..     1    23 []    15.7      5.4
SM00355      6/13    323   345 ..     1    23 []    20.0     0.34
SM00355      7/13    351   373 ..     1    23 []    29.1  0.00062
SM00355      8/13    379   401 ..     1    23 []    25.9   0.0056
SM00355      9/13    407   429 ..     1    23 []    26.0   0.0051
SM00355     10/13    435   457 ..     1    23 []    24.8    0.012
SM00355     11/13    463   485 ..     1    23 []    26.4   0.0041
SM00355     12/13    491   513 ..     1    23 []    25.6   0.0069
SM00355     13/13    519   541 ..     1    23 []    23.8    0.023

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 19 to 79: score 136.5, E = 2.8e-36
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V F DV +dFs+EEWe+LD  Q++LYRdVMlENYsnLvSLG + +sk
     fj13109    19    VMFSDVSIDFSPEEWEYLDLEQKDLYRDVMLENYSNLVSLG-CFISK 64   

                   pdliskLEqgeEpwi<-*
                   pd+is LEqg+Epw    
     fj13109    65 PDVISSLEQGKEPWK    79   

SM00355: domain 1 of 13, from 183 to 205: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H r+H   
     fj13109   183    YECKE-CGKAFRVRqQLTFHHRIH    205  

SM00355: domain 2 of 13, from 211 to 233: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f++  +L+rH+r H   
     fj13109   211    YECKE-CGMAFRQTaHLTRHQRLH    233  

SM00355: domain 3 of 13, from 239 to 261: score 23.3, E = 0.033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f    +L+ H+++H   
     fj13109   239    YECKE-CGEAFICGaDLRVHQKMH    261  

SM00355: domain 4 of 13, from 267 to 289: score 29.9, E = 0.00036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H+r+H   
     fj13109   267    YECKE-CGKAFRVRgQLTLHQRIH    289  

SM00355: domain 5 of 13, from 295 to 315: score 15.7, E = 5.4
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+++ +L+rH++     
     fj13109   295    YVCKE-CGKAFRQYaHLTRHQK--    315  

SM00355: domain 6 of 13, from 323 to 345: score 20.0, E = 0.34
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f   + L+ H + H   
     fj13109   323    YECKE-CGKAFLCGsGLRVHHKLH    345  

SM00355: domain 7 of 13, from 351 to 373: score 29.1, E = 0.00062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H+r+H   
     fj13109   351    YECKE-CGKAFRVRqQLTLHQRIH    373  

SM00355: domain 8 of 13, from 379 to 401: score 25.9, E = 0.0056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+  +L+ H r+H   
     fj13109   379    YECKE-CGKTFSRGyHLILHHRIH    401  

SM00355: domain 9 of 13, from 407 to 429: score 26.0, E = 0.0051
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k fs++++L+ H+ +H   
     fj13109   407    YECKE-CWKAFSRYsQLISHQSIH    429  

SM00355: domain 10 of 13, from 435 to 457: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+  ++L++H+ +H   
     fj13109   435    YDCKE-CGKAFRLLsQLTQHQSIH    457  

SM00355: domain 11 of 13, from 463 to 485: score 26.4, E = 0.0041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f+ ++ L+ H+ +H   
     fj13109   463    YKCKE-CGKAFRLRqKLTLHQSIH    485  

SM00355: domain 12 of 13, from 491 to 513: score 25.6, E = 0.0069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C k f+  ++L++H+r+H   
     fj13109   491    FECKE-CRKAFRLNsSLIQHLRIH    513  

SM00355: domain 13 of 13, from 519 to 541: score 23.8, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f+++++L++H+++H   
     fj13109   519    YECKE-CKKAFRQHsHLTHHLKIH    541  

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