# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj13119.fasta.nr -Q fj13119.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj13119, 101 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842896 sequences Expectation_n fit: rho(ln(x))= 4.4365+/-0.00018; mu= 6.8419+/- 0.010 mean_var=53.0429+/-10.284, 0's: 43 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.176100 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088032|dbj|BAD92463.1| PREDICTED: similar to ( 101) 713 188.4 1.4e-46 gi|194387156|dbj|BAG59944.1| unnamed protein produ ( 132) 408 110.9 3.6e-23 gi|23397010|sp|Q9NR11|ZN302_HUMAN Zinc finger prot ( 478) 388 106.3 3.4e-21 >>gi|62088032|dbj|BAD92463.1| PREDICTED: similar to regu (101 aa) initn: 713 init1: 713 opt: 713 Z-score: 991.5 bits: 188.4 E(): 1.4e-46 Smith-Waterman score: 713; 100.000% identity (100.000% similar) in 101 aa overlap (1-101:1-101) 10 20 30 40 50 60 fj1311 NKMQPFPHEYRHKMMICNPECLPHLISDTFLFSILFYPFRTAYPFPLSHSVPASVNFGFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NKMQPFPHEYRHKMMICNPECLPHLISDTFLFSILFYPFRTAYPFPLSHSVPASVNFGFS 10 20 30 40 50 60 70 80 90 100 fj1311 ALFEHCSEVTEIFELSELCVFWVLHFLSNSPNSTVEAFFKK ::::::::::::::::::::::::::::::::::::::::: gi|620 ALFEHCSEVTEIFELSELCVFWVLHFLSNSPNSTVEAFFKK 70 80 90 100 >>gi|194387156|dbj|BAG59944.1| unnamed protein product [ (132 aa) initn: 408 init1: 408 opt: 408 Z-score: 571.1 bits: 110.9 E(): 3.6e-23 Smith-Waterman score: 408; 100.000% identity (100.000% similar) in 60 aa overlap (42-101:73-132) 20 30 40 50 60 70 fj1311 HKMMICNPECLPHLISDTFLFSILFYPFRTAYPFPLSHSVPASVNFGFSALFEHCSEVTE :::::::::::::::::::::::::::::: gi|194 VAGLSVTKPYVIMLLEDGKEPWMMEKKLSKAYPFPLSHSVPASVNFGFSALFEHCSEVTE 50 60 70 80 90 100 80 90 100 fj1311 IFELSELCVFWVLHFLSNSPNSTVEAFFKK :::::::::::::::::::::::::::::: gi|194 IFELSELCVFWVLHFLSNSPNSTVEAFFKK 110 120 130 >>gi|23397010|sp|Q9NR11|ZN302_HUMAN Zinc finger protein (478 aa) initn: 388 init1: 388 opt: 388 Z-score: 535.8 bits: 106.3 E(): 3.4e-21 Smith-Waterman score: 388; 100.000% identity (100.000% similar) in 57 aa overlap (42-98:72-128) 20 30 40 50 60 70 fj1311 HKMMICNPECLPHLISDTFLFSILFYPFRTAYPFPLSHSVPASVNFGFSALFEHCSEVTE :::::::::::::::::::::::::::::: gi|233 SVGLSVTKPYVIMLLEDGKEPWMMEKKLSKAYPFPLSHSVPASVNFGFSALFEHCSEVTE 50 60 70 80 90 100 80 90 100 fj1311 IFELSELCVFWVLHFLSNSPNSTVEAFFKK ::::::::::::::::::::::::::: gi|233 IFELSELCVFWVLHFLSNSPNSTVEAFSRSKKKKKKKKKRQCFAFLIYFRLGIKMGKQGI 110 120 130 140 150 160 101 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 13:24:53 2008 done: Sun Aug 10 13:28:06 2008 Total Scan time: 479.800 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]