hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-13334490/chunk_1/iprscan-20080810-13334490.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj13132 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 249.9 4.9e-72 8 PF00096.16.fs Zinc finger, C2H2 type 234.2 2.7e-67 8 PF02023.7.ls SCAN domain 205.7 1e-58 1 PF02023.7.fs SCAN domain 203.7 3.9e-58 1 PF01352.17.fs KRAB box 55.6 4.4e-15 1 PF01352.17.ls KRAB box 57.6 3.8e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.ls 1/1 52 147 .. 1 96 [] 205.7 1e-58 PF02023.7.fs 1/1 52 147 .. 1 96 [] 203.7 3.9e-58 PF01352.17.fs 1/1 249 289 .. 1 41 [] 55.6 4.4e-15 PF01352.17.ls 1/1 249 289 .. 1 41 [] 57.6 3.8e-14 PF00096.16.ls 1/8 409 431 .. 1 24 [] 25.4 0.00018 PF00096.16.fs 1/8 409 431 .. 1 24 [] 23.5 0.00013 PF00096.16.ls 2/8 437 459 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 2/8 437 459 .. 1 24 [] 33.7 3.7e-07 PF00096.16.ls 3/8 493 515 .. 1 24 [] 36.2 1e-07 PF00096.16.fs 3/8 493 515 .. 1 24 [] 34.3 2.7e-07 PF00096.16.ls 4/8 521 543 .. 1 24 [] 35.1 2.2e-07 PF00096.16.fs 4/8 521 543 .. 1 24 [] 33.1 5.2e-07 PF00096.16.fs 6/8 577 599 .. 1 24 [] 25.4 4.4e-05 PF00096.16.ls 6/8 577 599 .. 1 24 [] 27.4 4.8e-05 PF00096.16.ls 7/8 605 627 .. 1 24 [] 35.1 2.3e-07 PF00096.16.fs 7/8 605 627 .. 1 24 [] 33.1 5.3e-07 PF00096.16.ls 8/8 633 655 .. 1 24 [] 37.3 5e-08 PF00096.16.fs 8/8 633 655 .. 1 24 [] 35.3 1.5e-07 Alignments of top-scoring domains: PF02023.7.ls: domain 1 of 1, from 52 to 147: score 205.7, E = 1e-58 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL p E+++q FR+frYqe++ PrEAL+rLReLChqWLrPE +TKEQIL fj13132 52 PVLETSHQNFRRFRYQEAASPREALIRLRELCHQWLRPERRTKEQIL 98 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLt+LP+ElQ+wV+++ PeSgEEaVtL+E L+++ +p+++V fj13132 99 ELLVLEQFLTVLPGELQSWVRGQRPESGEEAVTLVEGLQKQPRRPRRWV 147 -* fj13132 - - PF02023.7.fs: domain 1 of 1, from 52 to 147: score 203.7, E = 3.9e-58 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL p E+++q FR+frYqe++ PrEAL+rLReLChqWLrPE +TKEQIL fj13132 52 PVLETSHQNFRRFRYQEAASPREALIRLRELCHQWLRPERRTKEQIL 98 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLt+LP+ElQ+wV+++ PeSgEEaVtL+E L+++ +p+++V fj13132 99 ELLVLEQFLTVLPGELQSWVRGQRPESGEEAVTLVEGLQKQPRRPRRWV 147 -* fj13132 - - PF01352.17.fs: domain 1 of 1, from 249 to 289: score 55.6, E = 4.4e-15 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaV+F+q+ W Ldp+Q+++Y + +lE + +v fj13132 249 VTFKDVAVCFSQDQWSDLDPTQKEFYGEYVLEEDCGIVVSL 289 PF01352.17.ls: domain 1 of 1, from 249 to 289: score 57.6, E = 3.8e-14 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaV+F+q+ W Ldp+Q+++Y + +lE + +v fj13132 249 VTFKDVAVCFSQDQWSDLDPTQKEFYGEYVLEEDCGIVVSL 289 PF00096.16.ls: domain 1 of 8, from 409 to 431: score 25.4, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksF+ +s+L rHlrtH fj13132 409 HDCS-VCGKSFTCNSHLVRHLRTH 431 PF00096.16.fs: domain 1 of 8, from 409 to 431: score 23.5, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksF+ +s+L rHlrtH fj13132 409 HDCS-VCGKSFTCNSHLVRHLRTH 431 PF00096.16.ls: domain 2 of 8, from 437 to 459: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgks++r+s+L rH+++H fj13132 437 YKCM-ECGKSYTRSSHLARHQKVH 459 PF00096.16.fs: domain 2 of 8, from 437 to 459: score 33.7, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgks++r+s+L rH+++H fj13132 437 YKCM-ECGKSYTRSSHLARHQKVH 459 PF00096.16.ls: domain 3 of 8, from 493 to 515: score 36.2, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk F+ s+L rH+rtH fj13132 493 YRCD-DCGKHFRWTSDLVRHQRTH 515 PF00096.16.fs: domain 3 of 8, from 493 to 515: score 34.3, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk F+ s+L rH+rtH fj13132 493 YRCD-DCGKHFRWTSDLVRHQRTH 515 PF00096.16.ls: domain 4 of 8, from 521 to 543: score 35.1, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksFs+ks L++H+r+H fj13132 521 FFCT-ICGKSFSQKSVLTTHQRIH 543 PF00096.16.fs: domain 4 of 8, from 521 to 543: score 33.1, E = 5.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +CgksFs+ks L++H+r+H fj13132 521 FFCT-ICGKSFSQKSVLTTHQRIH 543 PF00096.16.fs: domain 6 of 8, from 577 to 599: score 25.4, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F++++ + +Hlr H fj13132 577 YLCS-ECGRCFTHSAAFAKHLRGH 599 PF00096.16.ls: domain 6 of 8, from 577 to 599: score 27.4, E = 4.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F++++ + +Hlr H fj13132 577 YLCS-ECGRCFTHSAAFAKHLRGH 599 PF00096.16.ls: domain 7 of 8, from 605 to 627: score 35.1, E = 2.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFsr+++L rH+rtH fj13132 605 CRCN-ECGKSFSRRDHLVRHQRTH 627 PF00096.16.fs: domain 7 of 8, from 605 to 627: score 33.1, E = 5.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFsr+++L rH+rtH fj13132 605 CRCN-ECGKSFSRRDHLVRHQRTH 627 PF00096.16.ls: domain 8 of 8, from 633 to 655: score 37.3, E = 5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp CgksFsr ++L rH+rtH fj13132 633 FTCP-TCGKSFSRGYHLIRHQRTH 655 PF00096.16.fs: domain 8 of 8, from 633 to 655: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp CgksFsr ++L rH+rtH fj13132 633 FTCP-TCGKSFSRGYHLIRHQRTH 655 //