hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13334490/chunk_1/iprscan-20080810-13334490.nocrc
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Query sequence: fj13132
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00431                                                 275.2    4.9e-78   1
SM00355                                                 212.9    2.8e-59   8
SM00349                                                  96.3    3.6e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00431      1/1      54   166 ..     1   113 []   275.2  4.9e-78
SM00349      1/1     249   309 ..     1    62 []    96.3  3.6e-24
SM00355      1/8     409   431 ..     1    23 []    24.3    0.017
SM00355      2/8     437   459 ..     1    23 []    28.8  0.00073
SM00355      3/8     493   515 ..     1    23 []    30.0  0.00032
SM00355      4/8     521   543 ..     1    23 []    29.7  0.00041
SM00355      5/8     549   571 ..     1    23 []    18.3      1.1
SM00355      6/8     577   599 ..     1    23 []    23.8    0.024
SM00355      7/8     605   627 ..     1    23 []    28.1   0.0013
SM00355      8/8     633   655 ..     1    23 []    30.1  0.00031

Alignments of top-scoring domains:
SM00431: domain 1 of 1, from 54 to 166: score 275.2, E = 4.9e-78
                   *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL
                       E+++q+FR+FrYqE++ PREAL+RLRELC+qWLRPE +TKEQILEL
     fj13132    54    LETSHQNFRRFRYQEAASPREALIRLRELCHQWLRPERRTKEQILEL 100  

                   LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah
                   LVLEQFLT+LPgELQ+WVr+++PeSGEEAVtL+E+L++++++p+++V++h
     fj13132   101 LVLEQFLTVLPGELQSWVRGQRPESGEEAVTLVEGLQKQPRRPRRWVTVH 150  

                   vhgqevLleemvplga<-*
                   vhgqevL+ee+v+lga   
     fj13132   151 VHGQEVLSEETVHLGA    166  

SM00349: domain 1 of 1, from 249 to 309: score 96.3, E = 3.6e-24
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLY.RdVMlENYsnLvSLGgfqvs
                      VtF+DVAV+Fsq+ W  LDp+Q+++Y+  V  E ++ +vSL  f+++
     fj13132   249    VTFKDVAVCFSQDQWSDLDPTQKEFYgEYVLEEDCGIVVSLS-FPIP 294  

                   kpdliskLEqgeEpwi<-*
                   +pd+is++ ++eEpw+   
     fj13132   295 RPDEISQV-REEEPWV    309  

SM00355: domain 1 of 8, from 409 to 431: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgksf+  ++L+rH+r+H   
     fj13132   409    HDCSV-CGKSFTCNsHLVRHLRTH    431  

SM00355: domain 2 of 8, from 437 to 459: score 28.8, E = 0.00073
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgks+++ ++L rH++vH   
     fj13132   437    YKCME-CGKSYTRSsHLARHQKVH    459  

SM00355: domain 3 of 8, from 493 to 515: score 30.0, E = 0.00032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+f++ ++L+rH+r+H   
     fj13132   493    YRCDD-CGKHFRWTsDLVRHQRTH    515  

SM00355: domain 4 of 8, from 521 to 543: score 29.7, E = 0.00041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cgksfs+k+ L+ H+r+H   
     fj13132   521    FFCTI-CGKSFSQKsVLTTHQRIH    543  

SM00355: domain 5 of 8, from 549 to 571: score 18.3, E = 1.1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cg+ fs ++ +  H ++H   
     fj13132   549    YLCGE-CGEDFSEHrRYLAHRKTH    571  

SM00355: domain 6 of 8, from 577 to 599: score 23.8, E = 0.024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cg++f++  a+ +H+r H   
     fj13132   577    YLCSE-CGRCFTHSaAFAKHLRGH    599  

SM00355: domain 7 of 8, from 605 to 627: score 28.1, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ Cgksfs++++L+rH+r+H   
     fj13132   605    CRCNE-CGKSFSRRdHLVRHQRTH    627  

SM00355: domain 8 of 8, from 633 to 655: score 30.1, E = 0.00031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp  Cgksfs+  +L+rH+r+H   
     fj13132   633    FTCPT-CGKSFSRGyHLIRHQRTH    655  

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