hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13400717/chunk_1/iprscan-20080810-13400717.nocrc
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Query sequence: fj13272
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          91.7    2.1e-24   3
PF00096.16.fs Zinc finger, C2H2 type                          85.7    1.3e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     363   387 ..     1    24 []    25.7  3.6e-05
PF00096.16.ls   1/3     363   387 ..     1    24 []    27.7  3.7e-05
PF00096.16.fs   2/3     393   417 ..     1    24 []    31.7  1.2e-06
PF00096.16.ls   2/3     393   417 ..     1    24 []    33.7  5.9e-07
PF00096.16.fs   3/3     423   445 ..     1    24 []    28.3  8.6e-06
PF00096.16.ls   3/3     423   445 ..     1    24 []    30.2  6.6e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 363 to 387: score 25.7, E = 3.6e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C++++Cgk++  +s+Lk+H rtH   
     fj13272   363    HICSHpGCGKTYFKSSHLKAHTRTH    387  

PF00096.16.ls: domain 1 of 3, from 363 to 387: score 27.7, E = 3.7e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C++++Cgk++  +s+Lk+H rtH   
     fj13272   363    HICSHpGCGKTYFKSSHLKAHTRTH    387  

PF00096.16.fs: domain 2 of 3, from 393 to 417: score 31.7, E = 1.2e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++++C ++F r+++L rH+rtH   
     fj13272   393    FSCSWkGCERRFARSDELSRHRRTH    417  

PF00096.16.ls: domain 2 of 3, from 393 to 417: score 33.7, E = 5.9e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++++C ++F r+++L rH+rtH   
     fj13272   393    FSCSWkGCERRFARSDELSRHRRTH    417  

PF00096.16.fs: domain 3 of 3, from 423 to 445: score 28.3, E = 8.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + Cp  C+++F r+++L++H r+H   
     fj13272   423    FACP-MCDRRFMRSDHLTKHARRH    445  

PF00096.16.ls: domain 3 of 3, from 423 to 445: score 30.2, E = 6.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + Cp  C+++F r+++L++H r+H   
     fj13272   423    FACP-MCDRRFMRSDHLTKHARRH    445  

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