hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13400717/chunk_1/iprscan-20080810-13400717.nocrc
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Query sequence: fj13272
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  77.4    1.8e-18   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     363   387 ..     1    23 []    22.2    0.074
SM00355      2/3     393   417 ..     1    23 []    28.9  0.00068
SM00355      3/3     423   445 ..     1    23 []    26.3   0.0043

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 363 to 387: score 22.2, E = 0.074
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gCgk++   ++Lk H r+H   
     fj13272   363    HICSHpGCGKTYFKSsHLKAHTRTH    387  

SM00355: domain 2 of 3, from 393 to 417: score 28.9, E = 0.00068
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gC ++f + ++L rH r+H   
     fj13272   393    FSCSWkGCERRFARSdELSRHRRTH    417  

SM00355: domain 3 of 3, from 423 to 445: score 26.3, E = 0.0043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ C+++f + ++L++H r+H   
     fj13272   423    FACPM-CDRRFMRSdHLTKHARRH    445  

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