hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13521858/chunk_1/iprscan-20080810-13521858.nocrc
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Query sequence: fj13336
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00704.18.ls  Glycosyl hydrolases family 18            384.1     2e-112   1
PF00704.18.fs  Glycosyl hydrolases family 18            382.2   7.4e-112   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00704.18.fs    1/1      64   424 ..     1   392 []   382.2 7.4e-112
PF00704.18.ls    1/1      64   424 ..     1   392 []   384.1   2e-112

Alignments of top-scoring domains:
PF00704.18.fs: domain 1 of 1, from 64 to 424: score 382.2, E = 7.4e-112
                   *->krivgYytqwgnygrgrleGakflvddidpsgkaAdklTHinyaFan
                      +++v+Y+t+w+ +++g  ++ + l+ d+dp     +++TH+++aFa 
     fj13336    64    HKLVCYFTNWAHSRPG--PA-SILPHDLDP-----FLCTHLIFAFAS 102  

                   idgdgtv......................tnddp.kgcfeqlkklK.kqn
                   +++++ v ++ ++ +   +  ++ +       + +  +      l + +n
     fj13336   103 MNNNQIVakdlqdekilypefnklkermwQQLPTgVKNPAHQPSLShHRN 152  

                   pglKvllSiGGwtfsgdennvagfs.lasdpakRktFidSivdflrkygL
                   + lK+llSi Gw+f++     + f +++s+ a+R++Fi+S++++lr+++ 
     fj13336   153 RELKTLLSIDGWNFGT-----SRFTtMLSTFANREKFIASVISLLRTHD- 196  

                   gRPlgDAvfDGiDiDWEyPggkprkwgsngglaspddvdedkdnytaLlk
                           fDG+D+++ yPg ++      +          d+  +  L++
     fj13336   197 --------FDGLDLFFLYPGLRG---SPMH----------DRWTFLFLIE 225  

                   eLrealkkeakadtGrkkgylLtaAvpagpdpdgkidggYdiakiskylD
                   eL  a+ kea  +  r +++lL+aAv+  p      + +Yd+  ++ +lD
     fj13336   226 ELLFAFRKEALLT-MR-PRLLLSAAVSGVPH---IVQTSYDVRFLGRLLD 270  

                   fiNvmtYDfhGpqaWdnqwgvtGhnapLydgswdpevtkgthdsgrrakf
                   fiNv +YD+hG  +W+    +tGhn+pL++ + dp               
     fj13336   271 FINVLSYDLHG--SWER---FTGHNSPLFSLPEDP--------------K 301  

                   NvdyavqyylckgvphasKlvlGiPfYgrgwtlvngsgngl.apa.....
                   + +ya++y+ + g+p ++Kl++GiP+Ygr + l + s+ngl+a a ++ +
     fj13336   302 SSAYAMNYWRKLGAP-SEKLIMGIPTYGRTFRLLKASKNGLqARAigpas 350  

                   pgpgtkegGvlsykeicall.gatvayddeakapyiyngstgkqfvsydd
                   pg++tk++G+l+y eic+++ ga++++ d + +py+ +g   k++v+yd+
     fj13336   351 PGKYTKQEGFLAYFEICSFVwGAKKHWIDYQYVPYANKG---KEWVGYDN 397  

                   prSikaKakYvkdkgLGGvmiWsldaD<-*
                   + S+++Ka +++  ++GG+m+W+ld+D   
     fj13336   398 AISFSYKAWFIRREHFGGAMVWTLDMD    424  

PF00704.18.ls: domain 1 of 1, from 64 to 424: score 384.1, E = 2e-112
                   *->krivgYytqwgnygrgrleGakflvddidpsgkaAdklTHinyaFan
                      +++v+Y+t+w+ +++g  ++ + l+ d+dp     +++TH+++aFa 
     fj13336    64    HKLVCYFTNWAHSRPG--PA-SILPHDLDP-----FLCTHLIFAFAS 102  

                   idgdgtv......................tnddp.kgcfeqlkklK.kqn
                   +++++ v ++ ++ +   +  ++ +       + +  +      l + +n
     fj13336   103 MNNNQIVakdlqdekilypefnklkermwQQLPTgVKNPAHQPSLShHRN 152  

                   pglKvllSiGGwtfsgdennvagfs.lasdpakRktFidSivdflrkygL
                   + lK+llSi Gw+f++     + f +++s+ a+R++Fi+S++++lr+++ 
     fj13336   153 RELKTLLSIDGWNFGT-----SRFTtMLSTFANREKFIASVISLLRTHD- 196  

                   gRPlgDAvfDGiDiDWEyPggkprkwgsngglaspddvdedkdnytaLlk
                           fDG+D+++ yPg ++      +          d+  +  L++
     fj13336   197 --------FDGLDLFFLYPGLRG---SPMH----------DRWTFLFLIE 225  

                   eLrealkkeakadtGrkkgylLtaAvpagpdpdgkidggYdiakiskylD
                   eL  a+ kea  +  r +++lL+aAv+  p      + +Yd+  ++ +lD
     fj13336   226 ELLFAFRKEALLT-MR-PRLLLSAAVSGVPH---IVQTSYDVRFLGRLLD 270  

                   fiNvmtYDfhGpqaWdnqwgvtGhnapLydgswdpevtkgthdsgrrakf
                   fiNv +YD+hG  +W+    +tGhn+pL++ + dp               
     fj13336   271 FINVLSYDLHG--SWER---FTGHNSPLFSLPEDP--------------K 301  

                   NvdyavqyylckgvphasKlvlGiPfYgrgwtlvngsgngl.apa.....
                   + +ya++y+ + g+p ++Kl++GiP+Ygr + l + s+ngl+a a ++ +
     fj13336   302 SSAYAMNYWRKLGAP-SEKLIMGIPTYGRTFRLLKASKNGLqARAigpas 350  

                   pgpgtkegGvlsykeicall.gatvayddeakapyiyngstgkqfvsydd
                   pg++tk++G+l+y eic+++ ga++++ d + +py+ +g   k++v+yd+
     fj13336   351 PGKYTKQEGFLAYFEICSFVwGAKKHWIDYQYVPYANKG---KEWVGYDN 397  

                   prSikaKakYvkdkgLGGvmiWsldaD<-*
                   + S+++Ka +++  ++GG+m+W+ld+D   
     fj13336   398 AISFSYKAWFIRREHFGGAMVWTLDMD    424  

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