hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13521858/chunk_1/iprscan-20080810-13521858.nocrc
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Query sequence: fj13336
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00636                                                 417.5   7.3e-121   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00636    1/1      64   424 ..     1   521 []   417.5 7.3e-121

Alignments of top-scoring domains:
SM00636: domain 1 of 1, from 64 to 424: score 417.5, E = 7.3e-121
                   *->krvvgYftnWasyrpgnriYGrnRngngkfppddippsklTHiiYAF
                      +++v+YftnWa +rp     G     +++ +p d++p+++TH+i+AF
     fj13336    64    HKLVCYFTNWAHSRP-----G-----PASILPHDLDPFLCTHLIFAF 100  

                   anidpdngtvellslgnpgsfelqrsgqcagrgDewadiddpwaa.qkpk
                   a ++ +n +v  +         lq++   + ++ ++   ++ w       
     fj13336   101 ASMN-NNQIVAKD---------LQDE--KILYPEFNKLKERMWQQlPTG- 137  

                   ssqkgvdwndppyknlygnflq.rltalKkkaknpnlKvllSIGGWtegs
                                k       q+ l   +    n+ lK+llSI GW++g+
     fj13336   138 ------------VK---NPAHQpSLSHHR----NRELKTLLSIDGWNFGT 168  

                   gdfdadnftSdkFs.masdepakRktFidSivsflrkygnaWKfFDGvDl
                             ++F++m+s+  a+R++Fi+S++s+lr+++     FDG+Dl
     fj13336   169 ----------SRFTtMLST-FANREKFIASVISLLRTHD-----FDGLDL 202  

                   DWEYPggrgangnlgdsegrpedddkddnyvaLlkELRealdkegayeae
                   ++ YPg rg++             d+ ++++ L++EL  a++ke    a 
     fj13336   203 FFLYPGLRGSPMH-----------DR-WTFLFLIEELLFAFRKE----AL 236  

                   kgtgrgylLtaAvpagpdkiydagdgllLglNteyYdvaeiakylDfiNl
                    + ++++lL+aAv+  p    + +           Ydv+ +++ lDfiN+
     fj13336   237 LTMRPRLLLSAAVSGVPHIV-QTS-----------YDVRFLGRLLDFINV 274  

                   MtYDfhGsgtpWdntwGgnpeptGhnapLyagpgdpegnydGtrgreyfn
                    +YD+hG   +W+        +tGhn+pL++ p+dp+            +
     fj13336   275 LSYDLHG---SWER-------FTGHNSPLFSLPEDPK------------S 302  

                   vdyavkygrVewlcaGekGlvppsaKlvlGiPfYGRgWtlvdgsnngglg
                     ya++y    w+   + G +p++ Kl++GiP+YGR++ l + s+n gl+
     fj13336   303 SAYAMNY----WR---KLG-APSE-KLIMGIPTYGRTFRLLKASKN-GLQ 342  

                   ialtgktkgApGipapftgqgpgtapvpgpgtktewegGvldYreickll
                                 a + g  p+++   g++tk   + G+l+Y eic+++
     fj13336   343 --------------ARAIG--PASP---GKYTK---QEGFLAYFEICSFV 370  

                   kgangtlpsnkpglglyttvwDdeaakapYaynpanggtgrkqwvsYDdp
                    g              ++++w d  +++pYa +    g+   +wv+YD++
     fj13336   371 WG--------------AKKHWIDY-QYVPYANK----GK---EWVGYDNA 398  

                   rSikaKadYvkdkgLGGvmilWeldgD<-*
                    S+++Ka +++ +  GG+m+ W+ld+D   
     fj13336   399 ISFSYKAWFIRREHFGGAMV-WTLDMD    424  

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