hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-13580721/chunk_1/iprscan-20080810-13580721.nocrc
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Query sequence: fj13355
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00273                                                 145.9    4.2e-39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00273    1/1      96   221 ..     1   137 []   145.9  4.2e-39

Alignments of top-scoring domains:
SM00273: domain 1 of 1, from 96 to 221: score 145.9, E = 4.2e-39
                   *->sdlevkVrkATnndewgpkgkhlreIlqgTsneklrssfaeimavlw
                      s + + V+kAT+++ +gpk+khl++++q+T++ +  + ++++++ l+
     fj13355    96    SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLF 140  

                   rRLndkgknWrvvyKaLillhyLlrnGspfervvlealrnrnrIltLsdf
                   +R +++  +W+vv+K+Li++h+L+  G+   ++++++l++rn++++Ls+f
     fj13355   141 ERTTNS--SWVVVFKSLITTHHLMVYGN---ERFIQYLASRNTLFNLSNF 185  

                   qdkvfndidsrgkDqGaniRtyakyLlelledderlkeer<-*
                    dk    ++ +g+D++ +iR+y++yL+e++  +++ ++++   
     fj13355   186 LDK----SGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDF    221  

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