hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-14040835/chunk_1/iprscan-20080810-14040835.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj13691 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00780.12.ls CNH domain 351.5 1.3e-102 1 PF00780.12.fs CNH domain 349.7 4.4e-102 1 PF00069.15.ls Protein kinase domain 284.4 2.1e-82 1 PF00069.15.fs Protein kinase domain 282.5 7.8e-82 1 PF07714.7.fs Protein tyrosine kinase 102.3 1.4e-29 1 PF07714.7.ls Protein tyrosine kinase 92.1 1.5e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.ls 1/1 73 330 .. 1 287 [] 284.4 2.1e-82 PF00069.15.fs 1/1 73 330 .. 1 287 [] 282.5 7.8e-82 PF07714.7.fs 1/1 73 260 .. 1 205 [. 102.3 1.4e-29 PF07714.7.ls 1/1 73 330 .. 1 272 [] 92.1 1.5e-24 PF00780.12.fs 1/1 619 931 .. 1 363 [] 349.7 4.4e-102 PF00780.12.ls 1/1 619 931 .. 1 363 [] 351.5 1.3e-102 Alignments of top-scoring domains: PF00069.15.ls: domain 1 of 1, from 73 to 330: score 284.4, E = 2.1e-82 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +el++++GsG++G Vyka++++tg++ A+K+ik++++e+ + ++ fj13691 73 FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEpGEDFAVVQQ-- 117 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls Ei ++k ++HpNIv +++++ ++d+l++++E+c+gG +L d+ + fj13691 118 ---EIIMMKDCKHPNIVAYFGSYLRRDKLWICMEFCGGG----SLQDIYH 160 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng gpl se ++ + +++l+gl+YLHs+g +HRD+K +NILl +ng fj13691 161 ---VTGPL--SELQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNG 205 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEv..llggngygt +v K+aDFG+++++ t + ++f GTp++mAPEv + gy + fj13691 206 HV----KLADFGVSAQI-TaTIAkRKSFIGTPYWMAPEVaaVERKGGYNQ 250 kvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspew +D W++G++ +el+ +pP + + +++l+ ++++ f p+ fj13691 251 LCDLWAVGITAIELAELQPPMFDL----HPMRALFLMTKS---NFQPPKL 293 dsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +++ ++s ++ +++k L+k+P+kR+tae +lqHP++ fj13691 294 KDKM--------KWSNSFHHFVKMALTKNPKKRPTAEKLLQHPFV 330 PF00069.15.fs: domain 1 of 1, from 73 to 330: score 282.5, E = 7.8e-82 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +el++++GsG++G Vyka++++tg++ A+K+ik++++e+ + ++ fj13691 73 FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEpGEDFAVVQQ-- 117 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls Ei ++k ++HpNIv +++++ ++d+l++++E+c+gG +L d+ + fj13691 118 ---EIIMMKDCKHPNIVAYFGSYLRRDKLWICMEFCGGG----SLQDIYH 160 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng gpl se ++ + +++l+gl+YLHs+g +HRD+K +NILl +ng fj13691 161 ---VTGPL--SELQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNG 205 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEv..llggngygt +v K+aDFG+++++ t + ++f GTp++mAPEv + gy + fj13691 206 HV----KLADFGVSAQI-TaTIAkRKSFIGTPYWMAPEVaaVERKGGYNQ 250 kvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspew +D W++G++ +el+ +pP + + +++l+ ++++ f p+ fj13691 251 LCDLWAVGITAIELAELQPPMFDL----HPMRALFLMTKS---NFQPPKL 293 dsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +++ ++s ++ +++k L+k+P+kR+tae +lqHP++ fj13691 294 KDKM--------KWSNSFHHFVKMALTKNPKKRPTAEKLLQHPFV 330 PF07714.7.fs: domain 1 of 1, from 73 to 260: score 102.3, E = 1.4e-29 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++l++ +G+G +G+Vyk++ +t+ A+K++k e+ fj13691 73 FELIQRIGSGTYGDVYKARNV----NTGELAAIKVIKL-EPGED--- 111 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL + +E+ +Mk +HpNiV + G ++ ++ l+i +E++ gG+L fj13691 112 FAVVQQEIIMMKDC-KHPNIVAYFGSYLR-RDK----LWICMEFCGGGSL 155 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d + +pL+ ++ +++ +G+ YL+sk+ HRD+ N+L++ fj13691 156 QDIYHV---TGPLSELQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLT 202 enlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygk... +n++VK +DFG + +i + +k ++ WmAPE+ + ++++ fj13691 203 DNGHVKLADFGVSAQI-----TaTIAKRKSFiGTPYWMAPEVAAVERkgg 247 FtskSDVWSFGVl<-* ++ D W+ G++ fj13691 248 YNQLCDLWAVGIT 260 PF07714.7.ls: domain 1 of 1, from 73 to 330: score 92.1, E = 1.5e-24 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++l++ +G+G +G+Vyk++ +t+ A+K++k e+ fj13691 73 FELIQRIGSGTYGDVYKARNV----NTGELAAIKVIKL-EPGED--- 111 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL + +E+ +Mk +HpNiV + G ++ ++ l+i +E++ gG+L fj13691 112 FAVVQQEIIMMKDC-KHPNIVAYFGSYLR-RDK----LWICMEFCGGGSL 155 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d + +pL+ ++ +++ +G+ YL+sk+ HRD+ N+L++ fj13691 156 QDIYHV---TGPLSELQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLT 202 enlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygk... +n++VK +DFG + +i + +k ++ WmAPE+ + ++++ fj13691 203 DNGHVKLADFGVSAQI-----TaTIAKRKSFiGTPYWMAPEVAAVERkgg 247 FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprP.. ++ D W+ G++ E+ l +P ++ + + l l ++++ + p+ ++ fj13691 248 YNQLCDLWAVGITAIELAELQ-PP-MFDLHPMRALFLMTKSNFQPPKLkd 295 .enCPdelYdlMlqCWaedPedRPtFsel..veeL<-* +++ + ++ ++ ++P++RPt + l ++ + fj13691 296 kMKWSNSFHHFVKMALTKNPKKRPTAEKLlqHPFV 330 PF00780.12.fs: domain 1 of 1, from 619 to 931: score 349.7, E = 4.4e-102 *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhdaflgklvkiigrrsv +++wi++ t++q+L +G+eeG+Y+ln++++h+ ++++++rr + fj13691 619 ASSWINPDTRDQYLIFGAEEGIYTLNLNELHET---SMEQLFPRR-C 661 tqlevieelnlLllLseGKkrhLylhpLsaLe..tekkdtaqgsskilrl t+l+v+ +n+Ll++s GK +Ly+h+L +L++ + + ++ +++ ++l fj13691 662 TWLYVM--NNCLLSIS-GKASQLYSHNLPGLFdyARQMQKLPVAIPAHKL 708 pektlarrfavskKipetkghCklccvgfiaegycggtkFLcvvAlksdd p+++l+r+f vs Kipetk+ C++ccv+++ +y+g+ k+Lc+ Al++ fj13691 709 PDRILPRKFSVSAKIPETKW-CQKCCVVRN--PYTGH-KYLCG-ALQT-- 751 lstsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpepvqsi si+l+eW e+++kf++ k+ f++p++l+++e+++ + fj13691 752 ---SIVLLEW----------VEPMQKFMLIKHIDFPIPCPLRMFEMLVVP 788 eflkpslcvGcskgfeillvlfgssgfhsldleGqseaaldlllPsndls e ++p++cvG+s g + ++v+++++ ++ ++ s+++ ++ +P fj13691 789 EQEYPLVCVGVSRGRDFNQVVRFET-VNPNST---SSWFTESDTP----- 829 lefakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqGrrsrk ++ ++++++ +rd++L+C++ ++++VNlqGr + fj13691 830 ---------QTNVTHVTQL------ERDTILVCLDCCIKIVNLQGRLKSS 864 kkdiselmWegaPesfayslypyllafhdngieIrsletgeltqeladrv +k+ sel +++++es+++ l++++laf+++g+++rs++++e+tqe++d + fj13691 865 RKLSSELTFDFQIESIVC-LQDSVLAFWKHGMQGRSFRSNEVTQEISDST 913 qtillnkirllvslrsls<-* ++++l++++++v+l+s++ fj13691 914 RIFRLLGSDRVVVLESRP 931 PF00780.12.ls: domain 1 of 1, from 619 to 931: score 351.5, E = 1.3e-102 *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhdaflgklvkiigrrsv +++wi++ t++q+L +G+eeG+Y+ln++++h+ ++++++rr + fj13691 619 ASSWINPDTRDQYLIFGAEEGIYTLNLNELHET---SMEQLFPRR-C 661 tqlevieelnlLllLseGKkrhLylhpLsaLe..tekkdtaqgsskilrl t+l+v+ +n+Ll++s GK +Ly+h+L +L++ + + ++ +++ ++l fj13691 662 TWLYVM--NNCLLSIS-GKASQLYSHNLPGLFdyARQMQKLPVAIPAHKL 708 pektlarrfavskKipetkghCklccvgfiaegycggtkFLcvvAlksdd p+++l+r+f vs Kipetk+ C++ccv+++ +y+g+ k+Lc+ Al++ fj13691 709 PDRILPRKFSVSAKIPETKW-CQKCCVVRN--PYTGH-KYLCG-ALQT-- 751 lstsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpepvqsi si+l+eW e+++kf++ k+ f++p++l+++e+++ + fj13691 752 ---SIVLLEW----------VEPMQKFMLIKHIDFPIPCPLRMFEMLVVP 788 eflkpslcvGcskgfeillvlfgssgfhsldleGqseaaldlllPsndls e ++p++cvG+s g + ++v+++++ ++ ++ s+++ ++ +P fj13691 789 EQEYPLVCVGVSRGRDFNQVVRFET-VNPNST---SSWFTESDTP----- 829 lefakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqGrrsrk ++ ++++++ +rd++L+C++ ++++VNlqGr + fj13691 830 ---------QTNVTHVTQL------ERDTILVCLDCCIKIVNLQGRLKSS 864 kkdiselmWegaPesfayslypyllafhdngieIrsletgeltqeladrv +k+ sel +++++es+++ l++++laf+++g+++rs++++e+tqe++d + fj13691 865 RKLSSELTFDFQIESIVC-LQDSVLAFWKHGMQGRSFRSNEVTQEISDST 913 qtillnkirllvslrsls<-* ++++l++++++v+l+s++ fj13691 914 RIFRLLGSDRVVVLESRP 931 //