hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-14040835/chunk_1/iprscan-20080810-14040835.nocrc
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Query sequence: fj13691
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00036                                                 401.6   4.5e-116   1
SM00220                                                 333.5    1.4e-95   1
SM00219                                                  61.3    6.3e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      73   330 ..     1   280 []    61.3  6.3e-15
SM00220    1/1      73   330 ..     1   231 []   333.5  1.4e-95
SM00036    1/1     618   931 ..     1   375 []   401.6 4.5e-116

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 73 to 330: score 61.3, E = 6.3e-15
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                       +l++ +G+G +G Vyk++  ++++  A+K++k + +++ +   +E+
     fj13691    73    FELIQRIGSGTYGDVYKARNVntgELAAIKVIKLEPgedFAVVQQEI 119  

                   kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr
                    +Mk    kHpNiV+ +G  +         + l+i mE++ gG+L+d  +
     fj13691   120 IMMKDC--KHPNIVAYFGSYLRR-------DKLWICMEFCGGGSLQDIYH 160  

                   knrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKI
                    ++p ls  +  + +    +G  YL+sk+  HRD+   N+L+++n++vK 
     fj13691   161 VTGP-LSELQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKL 209  

                   sDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl...kdg
                   +DFG s  ++           +rk+   g+       WmAPE+   +++g
     fj13691   210 ADFGVSAQITAT-------IAKRKSF-IGTP-----YWMAPEVAaveRKG 246  

                   kFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                    ++   D W+ G++  E+  l ++P  +     + + ++l +  k +  p
     fj13691   247 GYNQLCDLWAVGITAIELAEL-QPPMFD-----LHPMRALFLMTKSNFQP 290  

                   kPendlp.iSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                   +      ++     +   +   ++    +P++RPt + l ++ +    
     fj13691   291 PKLK--DkM---KWSNSFHHFVKMALTKNPKKRPTAEKLlqHPFV    330  

SM00220: domain 1 of 1, from 73 to 330: score 333.5, E = 1.4e-95
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                      +el++ +G+G++G Vy+ar+++tg+l AiKvik +++++   +++Ei
     fj13691    73    FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKlepgedfAVVQQEI 119  

                   kiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrgl
                    ++k  +HPNIV +++++  +dkl+++mE+c+G  G+L d+ +  g+   
     fj13691   120 IMMKDcKHPNIVAYFGSYLRrDKLWICMEFCGG--GSLQDIYHVTGP--- 164  

                   rkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaD
                      lsE +++++ r++l++L YLHs+g +HRD+K +NiLL++++hvKlaD
     fj13691   165 ---LSElQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDngHVKLAD 211  

                   FGlArql.......ttfvGTpeYmAPEvl......gYgkpavDiWSlGci
                   FG+++q++ +  ++++f+GTp++mAPEv   ++++gY+   +D W++G++
     fj13691   212 FGVSAQItatiakrKSFIGTPYWMAPEVAaverkgGYNQ-LCDLWAVGIT 260  

                   lyElltGkpPFp..qldlifkkig...............SpeakdLikkl
                    +El+  +pP  + ++++ + ++ +++  +++ +++ ++S ++ +++k  
     fj13691   261 AIELAELQPPMFdlHPMRALFLMTksnfqppklkdkmkwSNSFHHFVKMA 310  

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   L+k+P+kR+ta+++L+       HPf+   
     fj13691   311 LTKNPKKRPTAeKLLQ-------HPFV    330  

SM00036: domain 1 of 1, from 618 to 931: score 401.6, E = 4.5e-116
                   *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkdhegtlekl
                      +a +w+ p t+dq    +L++g+eeG+Y+ln++++    he ++e+l
     fj13691   618    CASSWINPDTRDQ----YLIFGAEEGIYTLNLNEL----HETSMEQL 656  

                   isrrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltqgntpi.i
                   ++rr   ++w+++ nn+Ll+isGk  qlysh+L++l+  ++  +  p  i
     fj13691   657 FPRR---CTWLYVMNNCLLSISGKASQLYSHNLPGLFDYARQMQKLPVaI 703  

                   kdalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilflcaalqs
                   ++++ ++r+++Rk++++ kip++k  c +c+v v++++tg+++lc+alq+
     fj13691   704 PAHKLPDRILPRKFSVSAKIPETKW-CQKCCV-VRNPYTGHKYLCGALQT 751  

                   sVvllaqwynplkkfklvksSNNiLNNEledikkflkklivplplfvelv
                   s+vll +w++p++kf+l+k              +++++++ pl++f++lv
     fj13691   752 SIVLL-EWVEPMQKFMLIK--------------HIDFPIPCPLRMFEMLV 786  

                   sssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslvskedls
                   ++++e+p vc+G++    G  +++vv f+             +v+++++s
     fj13691   787 VPEQEYPLVCVGVSR---GRDFNQVVRFE-------------TVNPNSTS 820  

                   lpfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvfVNlqG.
                   ++f++++t       ++ +v+q+++      d++L+c d + ++VNlqG+
     fj13691   821 SWFTESDTPQT----NVTHVTQLER------DTILVCLDCCIKIVNLQGr 860  

                   levrrsrkpiltwefmpesfayvepyllafhsngieIrsiktgelNlqel
                   l+++r+++++lt++f++es +++++++laf+++g+++rs+ ++e+ +qe+
     fj13691   861 LKSSRKLSSELTFDFQIESIVCLQDSVLAFWKHGMQGRSFRSNEV-TQEI 909  

                   adrsiikarkiRlLgsCeisdrkIllsssp<-*
                    d     +r++RlLg    sdr+++l+s+p   
     fj13691   910 SDS----TRIFRLLG----SDRVVVLESRP    931  

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