hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10105822/chunk_1/iprscan-20090618-10105822.nocrc
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Query sequence: fj13840
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00413                                                 200.9    1.2e-55   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00413    1/1      16   101 ..     1    90 []   200.9  1.2e-55

Alignments of top-scoring domains:
SM00413: domain 1 of 1, from 16 to 101: score 200.9, E = 1.2e-55
                   *->qiqLWqFLleLLldpennsdiIrWtdrsgGeFklvdpeeEVARLWGq
                       i+LWqFLl+LLld+++ +++I+Wt+++g eFkl+++ee VA+LWG 
     fj13840    16    AITLWQFLLQLLLDQKH-EHLICWTSNDG-EFKLLKAEE-VAKLWGL 59   

                   rKgNkpnMNYeKLSRALRyYYkknIlrKVeGkrlvYkFvkdpl<-*
                   rK Nk+nMNY+KLSRALRyYY+knI++KV G+++vYkFv+ p+   
     fj13840    60 RK-NKTNMNYDKLSRALRYYYDKNIIKKVIGQKFVYKFVSFPE    101  

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