hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-14222048/chunk_1/iprscan-20080810-14222048.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj13896 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.fs Protein kinase domain 133.4 8.6e-38 1 PF00069.15.ls Protein kinase domain 132.3 1.2e-36 1 PF07714.7.fs Protein tyrosine kinase 79.7 4.8e-23 3 PF07714.7.ls Protein tyrosine kinase 79.2 1.2e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 703 948 .. 1 276 [. 133.4 8.6e-38 PF00069.15.ls 1/1 703 960 .. 1 287 [] 132.3 1.2e-36 PF07714.7.fs 1/3 704 766 .. 1 72 [. 16.6 0.0001 PF07714.7.ls 1/1 704 957 .. 1 272 [] 79.2 1.2e-20 PF07714.7.fs 2/3 797 848 .. 107 158 .. 41.6 5.6e-12 PF07714.7.fs 3/3 867 957 .. 183 272 .] 21.6 3.5e-06 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 703 to 948: score 133.4, E = 8.6e-38 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +l++ lG+G +G+Vy++ + g A+K + ++ek++ d ++ fj13896 703 PKLGQELGRGQYGVVYLCDNWGGHFPCALKSVVPPDEKHWNDLAL-- 747 lsEiqilkrL.sHpNIvrlidvfed.......kdhlylVlEycegGLrvl E +++++L++H+ v l++++ d + +++++ + l++E + + fj13896 748 --EFHYMRSLpKHERLVDLHGSVIDynygggsSIAVLLIMERL-HR---- 790 dLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeN dL++ l+ +l + ++ ial +++g+ +LHs+g +HRD+K+ N fj13896 791 DLYTGLK-----AGL--TLETRLQIALDVVEGIRFLHSQGLVHRDIKLKN 833 ILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllgg +Lld+++ Ki+D G++ + ++vGTp mAPE+ + fj13896 834 VLLDKQNRA----KITDLGFC----KpEAMmSGSIVGTPIHMAPEL--FT 873 ngygtkvDvWSlGvilyelltGk....pPFsgevqds.ldqlqlirkilg +y+ +vDv+++G+++++ ++G + + F + + d+l+ ++++ fj13896 874 GKYDNSVDVYAFGILFWYICSGSvklpEAFERC---AsKDHLWNNVRRGA 920 pplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRl<-* +p + + + +ee+ +L++ c++ DP kR+ fj13896 921 RPERLPVF----------------DEECWQLMEACWDGDPLKRP 948 PF00069.15.ls: domain 1 of 1, from 703 to 960: score 132.3, E = 1.2e-36 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +l++ lG+G +G+Vy++ + g A+K + ++ek++ d ++ fj13896 703 PKLGQELGRGQYGVVYLCDNWGGHFPCALKSVVPPDEKHWNDLAL-- 747 lsEiqilkrL.sHpNIvrlidvfed.......kdhlylVlEycegGLrvl E +++++L++H+ v l++++ d + +++++ + l++E + + fj13896 748 --EFHYMRSLpKHERLVDLHGSVIDynygggsSIAVLLIMERL-HR---- 790 dLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeN dL++ l+ +l + ++ ial +++g+ +LHs+g +HRD+K+ N fj13896 791 DLYTGLK-----AGL--TLETRLQIALDVVEGIRFLHSQGLVHRDIKLKN 833 ILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllgg +Lld+++ Ki+D G++ + ++vGTp mAPE+ + fj13896 834 VLLDKQNRA----KITDLGFC----KpEAMmSGSIVGTPIHMAPEL--FT 873 ngygtkvDvWSlGvilyelltGk....pPFsgevqds.ldqlqlirkilg +y+ +vDv+++G+++++ ++G + + F + + d+l+ ++++ fj13896 874 GKYDNSVDVYAFGILFWYICSGSvklpEAFERC---AsKDHLWNNVRRGA 920 pplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt...ae +p + + + +ee+ +L++ c++ DP kR+ + + fj13896 921 RPERLPVF----------------DEECWQLMEACWDGDPLKRPLlgiVQ 954 eilqHPwf<-* lq + fj13896 955 PMLQG--I 960 PF07714.7.fs: domain 1 of 3, from 704 to 766: score 16.6, E = 0.0001 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie klg++LG+G++G+Vy++ g++ ++A K++ + +e++ fj13896 704 -KLGQELGRGQYGVVYLCDNW----GGHFPCALKSV--VPPDEKH-- 741 redFlrEAsiMkklGdHpNiVrLlG<-* + d+ E M++l++H+ +V L+G fj13896 742 WNDLALEFHYMRSLPKHERLVDLHG 766 PF07714.7.ls: domain 1 of 1, from 704 to 957: score 79.2, E = 1.2e-20 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie klg++LG+G++G+Vy++ g++ ++A K++ + +e++ fj13896 704 -KLGQELGRGQYGVVYLCDNW----GGHFPCALKSV--VPPDEKH-- 741 redFlrEAsiMkklGdHpNiVrLlGvct.......kegePggpglyiVtE + d+ E M++l++H+ +V L+G +++ + +++ + +++++E fj13896 742 WNDLALEFHYMRSLPKHERLVDLHGSVIdynygggS-SIA----VLLIME 786 ymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLA + dL++ L++ Ltl++ l++al++ +G +L+s+++vHRD+ fj13896 787 RLHR-DLYTGLKAG-----LTLETRLQIALDVVEGIRFLHSQGLVHRDIK 830 ARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggk..lPvkWmAPEsl +N+L+++++ +KI+D G ++ + +g+ + P+ mAPE l fj13896 831 LKNVLLDKQNRAKITDLGFCKPE-------AMMSGSIvgTPIH-MAPE-L 871 kygkFtskSDVWSFGVlLWEiftlGe.qP..FYpgm.sneevlellyedG ++gk+ DV++FG+l W i++ + P+ F + + s + + + ++G fj13896 872 FTGKYDNSVDVYAFGILFWYICSGSVkLPeaF-ERCaSKDHLWNNV-RRG 919 yRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* R +r + +e +lM CW+ dP +RP ++ L fj13896 920 ARPERLPVFDEECWQLMEACWDGDPLKRPLLGIVQPML 957 PF07714.7.fs: domain 2 of 3, from 797 to 848: score 41.6, E = 5.6e-12 *->grpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVsenlvVK + Ltl++ l++al++ +G +L+s+++vHRD+ +N+L+++++ +K fj13896 797 KAGLTLETRLQIALDVVEGIRFLHSQGLVHRDIKLKNVLLDKQNRAK 843 IsDFG<-* I+D G fj13896 844 ITDLG 848 PF07714.7.fs: domain 3 of 3, from 867 to 957: score 21.6, E = 3.5e-06 *->mAPEslkygkFtskSDVWSFGVlLWEiftlGe.qP..FYpgm.snee mAPE l++gk+ DV++FG+l W i++ + P+ F + + s fj13896 867 MAPE-LFTGKYDNSVDVYAFGILFWYICSGSVkLPeaF-ERCaSKDH 911 vlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* + + + ++G R +r + +e +lM CW+ dP +RP ++ L fj13896 912 LWNNV-RRGARPERLPVFDEECWQLMEACWDGDPLKRPLLGIVQPML 957 //