hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-14284436/chunk_1/iprscan-20080810-14284436.nocrc
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Query sequence: fj13915
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       307.9    1.7e-89   1
PF00069.15.fs Protein kinase domain                       306.0    6.6e-89   1
PF07714.7.fs Protein tyrosine kinase                      41.9    4.4e-12   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1      48   344 ..     1   287 []   306.0  6.6e-89
PF07714.7.fs   1/2      48   107 ..     1    69 [.    14.8  0.00034
PF00069.15.ls   1/1      48   344 ..     1   287 []   307.9  1.7e-89
PF07714.7.fs   2/2     130   215 ..    84   175 ..    27.2  8.4e-08

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 48 to 344: score 306.0, E = 6.6e-89
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y  l++lG G+ G V+ a++ +  k+VA+K+i + +  s k+  +  
     fj13915    48    YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALR-- 92   

                   lsEiqilkrLsHpNIvrlidvfed..............kdhlylVlEyce
                     Ei+i +rL+H+NIv+ +++   ++++ +++ ++ ++ +++y+V+Ey+e
     fj13915    93 --EIKIIRRLDHDNIVKVFEILGPsgsqltddvgslteLNSVYIVQEYME 140  

                   gGLrvldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHR
                         dL  +l     +gpl   e++a+ +++Q+lrgl+Y+Hs +++HR
     fj13915   141 T-----DLANVLE----QGPL--LEEHARLFMYQLLRGLKYIHSANVLHR 179  

                   DLKPeNILldnngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYm
                   DLKP+N++++ ++ v   lKi+DFGlA+ ++++++++++l+   +T wY+
     fj13915   180 DLKPANLFINTEDLV---LKIGDFGLARIMDphYsHKGhLSEGLVTKWYR 226  

                   APEvllggngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlir
                   +P +ll+ n y++++D+W++G+i++e+ltGk++F g+   ++l q+qli 
     fj13915   227 SPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA---HeLEQMQLIL 273  

                   kilgpplefdspewdsisrse.fr.........r.l.pnlseeakdLikk
                   +  +   e+d++e  s+ + + +++ ++++++ ++l p +s+ea+d+++ 
     fj13915   274 ESIPVVHEEDRQELLSVIPVYiRNdmtephkplTqLlPGISREALDFLEQ 323  

                   cLnkDPskRltaeeilqHPwf<-*
                   +L++ P +Rltaee+l HP++   
     fj13915   324 ILTFSPMDRLTAEEALSHPYM    344  

PF07714.7.fs: domain 1 of 2, from 48 to 107: score 14.8, E = 0.00034
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie
                         +k LG G  G V+ ++ +    + +  VA+K++  + ++++   
     fj13915    48    YMDLKPLGCGGNGLVFSAVDN----DCDKRVAIKKI--VLTDPQS-- 86   

                   redFlrEAsiMkklGdHpNiVr<-*
                    +  lrE++i ++l dH+NiV+   
     fj13915    87 VKHALREIKIIRRL-DHDNIVK    107  

PF00069.15.ls: domain 1 of 1, from 48 to 344: score 307.9, E = 1.7e-89
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y  l++lG G+ G V+ a++ +  k+VA+K+i + +  s k+  +  
     fj13915    48    YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALR-- 92   

                   lsEiqilkrLsHpNIvrlidvfed..............kdhlylVlEyce
                     Ei+i +rL+H+NIv+ +++   ++++ +++ ++ ++ +++y+V+Ey+e
     fj13915    93 --EIKIIRRLDHDNIVKVFEILGPsgsqltddvgslteLNSVYIVQEYME 140  

                   gGLrvldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHR
                         dL  +l     +gpl   e++a+ +++Q+lrgl+Y+Hs +++HR
     fj13915   141 T-----DLANVLE----QGPL--LEEHARLFMYQLLRGLKYIHSANVLHR 179  

                   DLKPeNILldnngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYm
                   DLKP+N++++ ++ v   lKi+DFGlA+ ++++++++++l+   +T wY+
     fj13915   180 DLKPANLFINTEDLV---LKIGDFGLARIMDphYsHKGhLSEGLVTKWYR 226  

                   APEvllggngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlir
                   +P +ll+ n y++++D+W++G+i++e+ltGk++F g+   ++l q+qli 
     fj13915   227 SPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA---HeLEQMQLIL 273  

                   kilgpplefdspewdsisrse.fr.........r.l.pnlseeakdLikk
                   +  +   e+d++e  s+ + + +++ ++++++ ++l p +s+ea+d+++ 
     fj13915   274 ESIPVVHEEDRQELLSVIPVYiRNdmtephkplTqLlPGISREALDFLEQ 323  

                   cLnkDPskRltaeeilqHPwf<-*
                   +L++ P +Rltaee+l HP++   
     fj13915   324 ILTFSPMDRLTAEEALSHPYM    344  

PF07714.7.fs: domain 2 of 2, from 130 to 215: score 27.2, E = 8.4e-08
                   *->g.lyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYL
                      +++yiV Eyme  dL + L +     pL  ++   f++Q  +G+ Y 
     fj13915   130    NsVYIVQEYMET-DLANVLEQG----PLLEEHARLFMYQLLRGLKYI 171  

                   esknfvHRDLAARNcLVse.nlvVKIsDFGLaRdiynddyYvrkkgg<-*
                   +s n  HRDL   N  ++ ++lv KI+DFGLaR +  d  Y   kg+   
     fj13915   172 HSANVLHRDLKPANLFINTeDLVLKIGDFGLARIM--DPHY-SHKGH    215  

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