hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-14284436/chunk_1/iprscan-20080810-14284436.nocrc
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Query sequence: fj13915
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 304.1      1e-86   1
SM00219                                                 -38.1    8.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      48   299 ..     1   280 []   -38.1  8.9e-09
SM00220    1/1      48   344 ..     1   231 []   304.1    1e-86

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 48 to 299: score -38.1, E = 8.9e-09
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                         +k LG+G  G V+ ++ ++ +  VA+K++    +++++  lrE+
     fj13915    48    YMDLKPLGCGGNGLVFSAVDNdcdKRVAIKKIVLTDpqsVKHALREI 94   

                   kiMkklGgkHpNiVkLlGvcteegrr.......FmevePlmivmEymegG
                   ki ++l  +H+NiVk + +   +g + +++ ++  e   ++iv Eyme  
     fj13915    95 KIIRRL--DHDNIVKVFEILGPSGSQltddvgsLTELNSVYIVQEYMET- 141  

                   dLldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvg
                   dL + L      l  ++   f++Q  +G  Y++s n+ HRDL   N  ++
     fj13915   142 DLANVLEQGP--LLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFIN 189  

                   enk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm.AP
                    +  v KI+DFGL+R  + +         Y++kg+  + + l  +W+++P
     fj13915   190 TEDlVLKIGDFGLARIMDPH---------YSHKGH-LSEG-LVTKWYrSP 228  

                   Esl.kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleyl
                     l   + +t + D W+ G    E++t G++   g          ++e+ 
     fj13915   229 RLLlSPNNYTKAIDMWAAGCIFAEMLT-GKTLFAG----------AHELE 267  

                   kkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<
                   +    l+  +          ++e  +  l+              ++ ++ 
     fj13915   268 QMQLILESIPV--------VHEEDRQELLSVIPV---------YIRNDM  299  

                   -*
                     
     fj13915     -    -    

SM00220: domain 1 of 1, from 48 to 344: score 304.1, E = 1e-86
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                      Y  lk+lG G+ G V+ a+d++ +++vAiK+i  +++++ +++lrEi
     fj13915    48    YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVltdpqsvKHALREI 94   

                   kiLkk.dHPNIVkLydvfed...............dklylVmEyceGdlG
                   ki ++ dH+NIVk +++   ++++ +++ ++ ++ +++y+V Ey+e+   
     fj13915    95 KIIRRlDHDNIVKVFEILGPsgsqltddvgsltelNSVYIVQEYMET--- 141  

                   dLfdllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPe
                   dL  +l++ +       l E++ar +++Q+l++L+Y+Hs +++HRDLKP+
     fj13915   142 DLANVLEQGP-------LLEeHARLFMYQLLRGLKYIHSANVLHRDLKPA 184  

                   NiLLds...hvKlaDFGlArql..........ttfvGTpeYmAPEvl...
                   N+++++++ ++K++DFGlAr+++++ +++++ +   +T +Y++P +l ++
     fj13915   185 NLFINTedlVLKIGDFGLARIMdphyshkghlSEGLVTKWYRSPRLLlsp 234  

                   .gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig..........
                   + Y+k a+D+W+ Gci++E+ltGk++F + ++ + +++i+++ +  ++++
     fj13915   235 nNYTK-AIDMWAAGCIFAEMLTGKTLFAgaHELEQMQLILesipvvheed 283  

                   ..............................SpeakdLikklLvkdPekRl
                   + +  +  + + +++ ++++++ +   ++ S+ea+d+++++L++ P +Rl
     fj13915   284 rqellsvipvyirndmtephkpltqllpgiSREALDFLEQILTFSPMDRL 333  

                   ta.eaLedeldikaHPff<-*
                   ta+eaL        HP++   
     fj13915   334 TAeEALS-------HPYM    344  

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