hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-14413921/chunk_1/iprscan-20080810-14413921.nocrc
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Query sequence: fj13933
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00288.16.fs  GHMP kinases N terminal domain            43.6    2.5e-11   1
PF00288.16.ls  GHMP kinases N terminal domain            45.3    1.9e-10   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00288.16.fs    1/1     126   181 ..     1    82 []    43.6  2.5e-11
PF00288.16.ls    1/1     126   181 ..     1    82 []    45.3  1.9e-10

Alignments of top-scoring domains:
PF00288.16.fs: domain 1 of 1, from 126 to 181: score 43.6, E = 2.5e-11
                   *->dieiesniPvgaGLGSSaAlavAtllAlnelfglpdldveelpdlsk
                      ++   +n+P++aGL+SSaA  +++++ l++ +g++          s+
     fj13933   126    HVASVNNFPTAAGLASSAAGYACLAYTLARVYGVE----------SD 162  

                   eeLaiarlalaaEneaahGvpGsGdDvqaaslyGG<-*
                          l+ +a+          G++ +++slyGG   
     fj13933   163 -------LSEVAR---------RGSGSACRSLYGG    181  

PF00288.16.ls: domain 1 of 1, from 126 to 181: score 45.3, E = 1.9e-10
                   *->dieiesniPvgaGLGSSaAlavAtllAlnelfglpdldveelpdlsk
                      ++   +n+P++aGL+SSaA  +++++ l++ +g++          s+
     fj13933   126    HVASVNNFPTAAGLASSAAGYACLAYTLARVYGVE----------SD 162  

                   eeLaiarlalaaEneaahGvpGsGdDvqaaslyGG<-*
                          l+ +a+          G++ +++slyGG   
     fj13933   163 -------LSEVAR---------RGSGSACRSLYGG    181  

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