hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-15015782/chunk_1/iprscan-20080810-15015782.nocrc
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Query sequence: fj14036
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00625.11.fs Guanylate kinase                           79.3    1.6e-21   1
PF00625.11.ls Guanylate kinase                           24.4      9e-07   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00625.11.ls   1/1      10    85 ..     1   107 []    24.4    9e-07
PF00625.11.fs   1/1      11    65 ..    32    87 ..    79.3  1.6e-21

Alignments of top-scoring domains:
PF00625.11.ls: domain 1 of 1, from 10 to 85: score 24.4, E = 9e-07
                   *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk
                                                     FLE++e+ +N+YGTs+
     fj14036    10    ------------------------------RFLEHGEYKENLYGTSL 26   

                   eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL
                   ea+++v +++k c+ Dvep ++kqlrt e+  P+++F++P  ++  +++ 
     fj14036    27 EAIQAVMAKNKVCLVDVEPEALKQLRTSEFK-PYIIFVKPAIQEKRKTPP 75   

                   rgrnketEEs<-*
                    +   e+ +    
     fj14036    76 MSPACEDTAA    85   

PF00625.11.fs: domain 1 of 1, from 11 to 65: score 79.3, E = 1.6e-21
                   *->FLEyaefnGNyYGTskeaVrqvaksGkiciLDvepQGvkqlrtaels
                      FLE++e+ +N+YGTs+ea+++v +++k c+ Dvep ++kqlrt e+ 
     fj14036    11    FLEHGEYKENLYGTSLEAIQAVMAKNKVCLVDVEPEALKQLRTSEFK 57   

                   NPvsvFIaP<-*
                    P+++F++P   
     fj14036    58 -PYIIFVKP    65   

//