hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-15074484/chunk_1/iprscan-20080810-15074484.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj14187 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00003.12.ls 7 transmembrane receptor (metabotropic g 477.6 1.4e-140 1 PF00003.12.fs 7 transmembrane receptor (metabotropic g 475.7 5.2e-140 1 PF01094.18.ls Receptor family ligand binding region 375.3 8.6e-110 1 PF01094.18.fs Receptor family ligand binding region 373.6 2.8e-109 1 PF07562.4.fs Nine Cysteines Domain of family 3 GPCR 69.5 9.8e-21 1 PF07562.4.ls Nine Cysteines Domain of family 3 GPCR 71.5 2.5e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.ls 1/1 124 530 .. 1 421 [] 375.3 8.6e-110 PF01094.18.fs 1/1 124 530 .. 1 421 [] 373.6 2.8e-109 PF07562.4.fs 1/1 563 598 .. 1 37 [] 69.5 9.8e-21 PF07562.4.ls 1/1 563 598 .. 1 37 [] 71.5 2.5e-18 PF00003.12.fs 1/1 638 899 .. 1 279 [] 475.7 5.2e-140 PF00003.12.ls 1/1 638 899 .. 1 279 [] 477.6 1.4e-140 Alignments of top-scoring domains: PF01094.18.ls: domain 1 of 1, from 124 to 530: score 375.3, E = 8.6e-110 *->qvlpAmrlAiediNadggillpgitlgvedddtcs.ds.alcsslsF ++l+Am++A+++iN+d++ llp+itlg++++dtcs+d++al++sl+F fj14187 124 HRLEAMLFALDRINNDPD-LLPNITLGARILDTCSrDThALEQSLTF 169 ...........dd.aavaaaacllkskgVvaiiGPscssvaiavarlane + ++++++ + ++ k+++Vv++iG+s+ssv+i+va+++++ fj14187 170 vqaliekdgteVRcGSGGPPI-ITKPERVVGVIGASGSSVSIMVANILRL 218 wgiPlisygatapslsdklknryptfaRtvpsdtkqgaAiadilkhtfgW ++iP+isy++tap lsd +ry++f R+vpsdt+q++A++di++ ++W fj14187 219 FKIPQISYASTAPDLSD--NSRYDFFSRVVPSDTYQAQAMVDIVRA-LKW 265 krvaviyddddydygeggcYFtlealedalkeaggkvvavAqasdvvvvs ++v++++++++y ge+g +ea+ + +e gg ++a+ s fj14187 266 NYVSTVASEGSY--GESG----VEAFIQKSREDGGVCIAQ---------S 300 evissdddftallkelkdlik.skarvivlcgssddlgllkrqilrqare ++i+++ + +++k++++l+++s+ar +++++++dd+ r++l++a fj14187 301 VKIPREPKAGEFDKIIRRLLEtSNARAVIIFANEDDI----RRVLEAA-- 344 lGl.msggYvwiltdlwsdsldsqgdgsdlpwariagadeGlltartfpf ++ + +g++ w ++d+w++ fj14187 345 RRAnQTGHFFWMGSDSWGSKI----------------------------- 365 qldndkareaakgvlgitlk.p.spefqeflerlkk.............. + ++e a+g ++i +k+ ++++f++++++++ ++++++ + + fj14187 366 -APVLHLEEVAEGAVTILPKrMsVRGFDRYFSSRTLdnnrrniwfaefwe 414 ..............................sdtevnayallaYDAVyllA ++ + + +++ +++++ ++ +++++ +++s +e+++ ++++ DAVy+++ fj14187 415 dnfhcklsrhalkkgshvkkctnrerigqdSAYEQEGKVQFVIDAVYAMG 464 hAlnealrddpngtaglcnacrdsrvddasnalgglnlglmkw.dGsqll hAl++++rd+++g +glc++ m++ dG+qll fj14187 465 HALHAMHRDLCPGRVGLCPR--------------------MDPvDGTQLL 494 eylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* +y+rn vnF G++G+ + + ++g+ p+++ +++++ + fj14187 495 KYIRN-VNFSGIAGNPVTFNENGDAPGRYDIYQYQLR 530 PF01094.18.fs: domain 1 of 1, from 124 to 530: score 373.6, E = 2.8e-109 *->qvlpAmrlAiediNadggillpgitlgvedddtcs.ds.alcsslsF ++l+Am++A+++iN+d++ llp+itlg++++dtcs+d++al++sl+F fj14187 124 HRLEAMLFALDRINNDPD-LLPNITLGARILDTCSrDThALEQSLTF 169 ...........dd.aavaaaacllkskgVvaiiGPscssvaiavarlane + ++++++ + ++ k+++Vv++iG+s+ssv+i+va+++++ fj14187 170 vqaliekdgteVRcGSGGPPI-ITKPERVVGVIGASGSSVSIMVANILRL 218 wgiPlisygatapslsdklknryptfaRtvpsdtkqgaAiadilkhtfgW ++iP+isy++tap lsd +ry++f R+vpsdt+q++A++di++ ++W fj14187 219 FKIPQISYASTAPDLSD--NSRYDFFSRVVPSDTYQAQAMVDIVRA-LKW 265 krvaviyddddydygeggcYFtlealedalkeaggkvvavAqasdvvvvs ++v++++++++y ge+g +ea+ + +e gg ++a+ s fj14187 266 NYVSTVASEGSY--GESG----VEAFIQKSREDGGVCIAQ---------S 300 evissdddftallkelkdlik.skarvivlcgssddlgllkrqilrqare ++i+++ + +++k++++l+++s+ar +++++++dd+ r++l++a fj14187 301 VKIPREPKAGEFDKIIRRLLEtSNARAVIIFANEDDI----RRVLEAA-- 344 lGl.msggYvwiltdlwsdsldsqgdgsdlpwariagadeGlltartfpf ++ + +g++ w ++d+w++ fj14187 345 RRAnQTGHFFWMGSDSWGSKI----------------------------- 365 qldndkareaakgvlgitlk.p.spefqeflerlkk.............. + ++e a+g ++i +k+ ++++f++++++++ ++++++ + + fj14187 366 -APVLHLEEVAEGAVTILPKrMsVRGFDRYFSSRTLdnnrrniwfaefwe 414 ..............................sdtevnayallaYDAVyllA ++ + + +++ +++++ ++ +++++ +++s +e+++ ++++ DAVy+++ fj14187 415 dnfhcklsrhalkkgshvkkctnrerigqdSAYEQEGKVQFVIDAVYAMG 464 hAlnealrddpngtaglcnacrdsrvddasnalgglnlglmkw.dGsqll hAl++++rd+++g +glc++ m++ dG+qll fj14187 465 HALHAMHRDLCPGRVGLCPR--------------------MDPvDGTQLL 494 eylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* +y+rn vnF G++G+ + + ++g+ p+++ +++++ + fj14187 495 KYIRN-VNFSGIAGNPVTFNENGDAPGRYDIYQYQLR 530 PF07562.4.fs: domain 1 of 1, from 563 to 598: score 69.5, E = 9.8e-21 *->PvSvCSepCppGqrKkiqkGepiCCfdCvpCpdgeys<-* P+S CS+pC+pG+rKk++kG+p CC++C+pC+ ++y+ fj14187 563 PRSICSLPCQPGERKKTVKGMP-CCWHCEPCTGYQYQ 598 PF07562.4.ls: domain 1 of 1, from 563 to 598: score 71.5, E = 2.5e-18 *->PvSvCSepCppGqrKkiqkGepiCCfdCvpCpdgeys<-* P+S CS+pC+pG+rKk++kG+p CC++C+pC+ ++y+ fj14187 563 PRSICSLPCQPGERKKTVKGMP-CCWHCEPCTGYQYQ 598 PF00003.12.fs: domain 1 of 1, from 638 to 899: score 475.7, E = 5.2e-140 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc +++lAv+G i++TlfV+++Fv+++dTPiVKAs+reLSY+LL+g++lc fj14187 638 PLFLAVVG-IAATLFVVITFVRYNDTPIVKASGRELSYVLLAGIFLC 683 flcsflFIgkGtvekPsewsCiLRrilfGlgFtlcySalLaKTirVlraF ++++fl+I++ P+ ++C+LRri++Glg++++y alL+KT+r++r+F fj14187 684 YATTFLMIAE-----PDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIF 728 rkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdkdi +++ ++s++ ++fisp++q++i+++l+++Q++++++W+vv+P ++++d fj14187 729 EQG--KRSVSAPRFISPASQLAITFSLISLQLLGICVWFVVDPSHSVVDF 776 hsekekeedeDvsiapiileCnkgsvvaFvvvLgYlglLavlcfflAflt + +++ ++ ++a+++l+C++++ ++++++LgY++lL+v+c+++A++t fj14187 777 QDQRTLDP----RFARGVLKCDISD-LSLICLLGYSMLLMVTCTVYAIKT 821 RklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykvqva R +P ++FNEAK+I+F+M +t+CiVW+AFiP++++t++sa+++++q++ fj14187 822 RGVP-ETFNEAKPIGFTM---YTTCIVWLAFIPIFFGTSQSADKLYIQTT 867 veifsIlaSStglLgciFaPKcYIILfkPekn<-* ++++s+++S+++ Lg++++PK+YIILf+Pe+n fj14187 868 TLTVSVSLSASVSLGMLYMPKVYIILFHPEQN 899 PF00003.12.ls: domain 1 of 1, from 638 to 899: score 477.6, E = 1.4e-140 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc +++lAv+G i++TlfV+++Fv+++dTPiVKAs+reLSY+LL+g++lc fj14187 638 PLFLAVVG-IAATLFVVITFVRYNDTPIVKASGRELSYVLLAGIFLC 683 flcsflFIgkGtvekPsewsCiLRrilfGlgFtlcySalLaKTirVlraF ++++fl+I++ P+ ++C+LRri++Glg++++y alL+KT+r++r+F fj14187 684 YATTFLMIAE-----PDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIF 728 rkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdkdi +++ ++s++ ++fisp++q++i+++l+++Q++++++W+vv+P ++++d fj14187 729 EQG--KRSVSAPRFISPASQLAITFSLISLQLLGICVWFVVDPSHSVVDF 776 hsekekeedeDvsiapiileCnkgsvvaFvvvLgYlglLavlcfflAflt + +++ ++ ++a+++l+C++++ ++++++LgY++lL+v+c+++A++t fj14187 777 QDQRTLDP----RFARGVLKCDISD-LSLICLLGYSMLLMVTCTVYAIKT 821 RklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykvqva R +P ++FNEAK+I+F+M +t+CiVW+AFiP++++t++sa+++++q++ fj14187 822 RGVP-ETFNEAKPIGFTM---YTTCIVWLAFIPIFFGTSQSADKLYIQTT 867 veifsIlaSStglLgciFaPKcYIILfkPekn<-* ++++s+++S+++ Lg++++PK+YIILf+Pe+n fj14187 868 TLTVSVSLSASVSLGMLYMPKVYIILFHPEQN 899 //