hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-15153064/chunk_1/iprscan-20080810-15153064.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj14406y3 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.fs Dynein heavy chain 929.5 3.3e-280 2 PF03028.6.ls Dynein heavy chain 926.4 1.1e-275 1 PF07728.4.ls ATPase family associated with various ce 11.7 0.00021 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07728.4.ls 1/1 183 330 .. 1 184 [] 11.7 0.00021 PF03028.6.ls 1/1 1493 2247 .. 1 783 [] 926.4 1.1e-275 PF03028.6.fs 2/2 1580 2247 .. 78 783 .] 928.5 6.9e-280 Alignments of top-scoring domains: PF07728.4.ls: domain 1 of 1, from 183 to 330: score 11.7, E = 0.00021 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg +vl+ G +G+GKs +a+ l+ ++ g+ ++y ++++t+++ fj14406y3 183 SVLFTGITGVGKSVIAKGLLNKIQESAGYVPVYLNFSAQTSSARTQE 229 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras +++ + ++ + +L + + ++++D++n+ + fj14406y3 230 IIE-------SKLERKRKNILGAPGN----------KRIVIFVDDLNMPR 262 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli + ++ ++++ r + + gg++ + +++ k ++ fj14406y3 263 LDRYGSQ-PPIELLRQYQDFGGFYDRNKLFWKEIQD-------------- 297 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* + +i ++ p++ +g+n++ + ++r F + ++ p fj14406y3 298 --VTIISACAPPG--GGRNPVTPRFIRHFSMLCLPMP 330 PF03028.6.ls: domain 1 of 1, from 1493 to 2247: score 926.4, E = 1.1e-275 *->lentypnpkvdwlsdqqWdsiarLselee...FrgLdddleknapdk ++ p+p wl++ W +++ L+e + + F+gL++++ ++ + fj14406y3 1493 EKERPPKPEAPWLPTATWFACCDLEE--SfpvFHGLTQNILSHPISI 1537 rWkkwydseqPgEeeklPkeWkdeq.kl..................sids r + +P ++W+ +k ++++++ +++++ +++++ s fj14406y3 1538 RLGSFETYINP-------QKWE-GYsKMkhedkhmrqekeaahqdpW--S 1577 lkksaFqKLlllRalRPDRltyalrnFveekLpGekfvepdppldlskiy +s F+KL+l+++ ++++++ al++Fv+e+L G++f+e+ pp+dl y fj14406y3 1578 AGLSSFHKLILIKCCKEEKVVFALTDFVIENL-GKQFIET-PPVDLPTLY 1625 ekeSspstPilFiLSPGaDPskdvekLAkkmGFtfdnGkklhSiSLGQGQ + + s++tP++FiLS+G+DP++ + +A++ G++ ++ +SiSLGQGQ fj14406y3 1626 Q-DMSCNTPLVFILSTGSDPMGAFQRFARESGYS----ERVQSISLGQGQ 1670 gpniAekaIetAaksGhWVlLQNiHLaasWLptLEKkLesltppegtHpd gp iAek+ + A ksG+WV+LQN+HLa sW+ E + +t p+++ d fj14406y3 1671 GP-IAEKMVKDAMKSGNWVFLQNCHLAVSWMLAMEELIKTFTDPDSAIKD 1719 .FRLFLTaEpaprPeehIfPiglLqnSiKiTNEPPtGlKANLlraysnDP +FRLFL+++p+ + fP+++LqnS+K+TNEPP+Gl+AN++ra++ fj14406y3 1720 tFRLFLSSMPSNT-----FPVTVLQNSVKVTNEPPKGLRANIRRAFTE-- 1762 IfdqeflemckkpaefkrllFlLCfFHAVVqERRkFGPlGWNksYEFNes ++ f+e ++++++F++CfFHA++qER+kFGPlGWN+ YEFN+s fj14406y3 1763 -MTPSFFEENILGKKWRQIIFGICFFHAIIQERKKFGPLGWNICYEFNDS 1811 DLriSvdvldnyLeanakGRqNidpdkvPWeaLRYlfGeimYGGrItDdw D++++++ l y + k+PW+aL Y++Gei+YGGr+tD w fj14406y3 1812 DRECALLNLKLYCKEG----------KIPWDALIYITGEITYGGRVTDSW 1851 DrRLLrtyLeefftpelfdgnadyeLapkidgdlgfavPpntdyeeYiey D+R+Lrt+L +ff pe ++ dy++ + ++++f +P + +e+ y fj14406y3 1852 DQRCLRTILKRFFSPETLEE--DYKYSE---SGIYF-APMADSLQEFKDY 1895 IeesLPsessPelfGLhpNAEIgfltqeteklirtllelQpreaggeldg Ie+ LP +++Pe+fG+h+NA+ +f+ +et +li+t+le+Qpr++ g fj14406y3 1896 IEN-LPLIDDPEIFGMHENANLVFQYKETSTLINTILEVQPRSST----G 1940 gsgekvsrkkdssEEvvkqvlrdileklpkklCqklFdkeelmlkrt.ee g+g +s+ +E+v+++ + +++++p kl + e+ + ++ fj14406y3 1941 GEG--KSN-----DEIVQELVASVQTRVPEKL--EMEGASESLFVKDlQG 1981 ikdPlfvVlvQEiermNkLlkeirrSLkeLdlglkGeltmsndlEeliks ++l++Vl QE++r+N Llk i++SL+ L +++ G ++ms+++E++++s fj14406y3 1982 RLNSLTTVLGQEVDRFNNLLKLIHTSLETLNKAIAGFVVMSEEMEKVYNS 2031 LlngrVPaWDmWakksyPslkpLgsWvtDLlkRirQLqeWtedsGGAklg ln++VPa W + +yPslkpLgsWv DL R+ + + W + g fj14406y3 2032 FLNNQVPA--LWSNTAYPSLKPLGSWVKDLILRTSFVDLWLKR------G 2073 lPkvvWLsGFFnPQsFLTAimQsvARknkwPLDkLcLdteVtkkekeeqd +Pk++W+sGFF+PQ FLT++ Q+ ARk+ +P+D+L + + V +++ fj14406y3 2074 QPKSYWISGFFFPQGFLTGTLQNHARKYNLPIDELSFKYSVI----PTYR 2119 skep......................PedGvyVhGLfLEGArWDsktgll + + + ++ + +++ + + + ++PedGv VhG+f++ rWD k++++ fj14406y3 2120 DQAAvieaaktvqfgqelpmdmelpsPEDGVLVHGMFMDASRWDDKEMVI 2169 aeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvLSTTG ++++p + +++PV+++ + + ++ y cP+Ykt aR g+LSTTG fj14406y3 2170 EDALPGQMNPVLPVVHFEPQQN--YKPSPTLYHCPLYKTGARAGTLSTTG 2217 HStnyvftfnLktkedtpaskWilaGVALllq<-* HStn+v+t++L++k +++ Wi +G ALl+q fj14406y3 2218 HSTNFVVTVLLPSKR--SKDYWIAKGSALLCQ 2247 PF03028.6.fs: domain 2 of 2, from 1580 to 2247: score 928.5, E = 6.9e-280 *->ksaFqKLlllRalRPDRltyalrnFveekLpGekfvepdppldlski +s F+KL+l+++ ++++++ al++Fv+e+L G++f+e+ pp+dl fj14406y3 1580 LSSFHKLILIKCCKEEKVVFALTDFVIENL-GKQFIET-PPVDLPTL 1624 yekeSspstPilFiLSPGaDPskdvekLAkkmGFtfdnGkklhSiSLGQG y+ + s++tP++FiLS+G+DP++ + +A++ G++ ++ +SiSLGQG fj14406y3 1625 YQ-DMSCNTPLVFILSTGSDPMGAFQRFARESGYS----ERVQSISLGQG 1669 QgpniAekaIetAaksGhWVlLQNiHLaasWLptLEKkLesltppegtHp Qgp iAek+ + A ksG+WV+LQN+HLa sW+ E + +t p+++ fj14406y3 1670 QGP-IAEKMVKDAMKSGNWVFLQNCHLAVSWMLAMEELIKTFTDPDSAIK 1718 d.FRLFLTaEpaprPeehIfPiglLqnSiKiTNEPPtGlKANLlraysnD d+FRLFL+++p+ + fP+++LqnS+K+TNEPP+Gl+AN++ra++ fj14406y3 1719 DtFRLFLSSMPSNT-----FPVTVLQNSVKVTNEPPKGLRANIRRAFTE- 1762 PIfdqeflemckkpaefkrllFlLCfFHAVVqERRkFGPlGWNksYEFNe ++ f+e ++++++F++CfFHA++qER+kFGPlGWN+ YEFN+ fj14406y3 1763 --MTPSFFEENILGKKWRQIIFGICFFHAIIQERKKFGPLGWNICYEFND 1810 sDLriSvdvldnyLeanakGRqNidpdkvPWeaLRYlfGeimYGGrItDd sD++++++ l y + k+PW+aL Y++Gei+YGGr+tD fj14406y3 1811 SDRECALLNLKLYCKEG----------KIPWDALIYITGEITYGGRVTDS 1850 wDrRLLrtyLeefftpelfdgnadyeLapkidgdlgfavPpntdyeeYie wD+R+Lrt+L +ff pe ++ dy++ + ++++f +P + +e+ fj14406y3 1851 WDQRCLRTILKRFFSPETLEE--DYKYSE---SGIYF-APMADSLQEFKD 1894 yIeesLPsessPelfGLhpNAEIgfltqeteklirtllelQpreaggeld yIe+ LP +++Pe+fG+h+NA+ +f+ +et +li+t+le+Qpr++ fj14406y3 1895 YIEN-LPLIDDPEIFGMHENANLVFQYKETSTLINTILEVQPRSST---- 1939 ggsgekvsrkkdssEEvvkqvlrdileklpkklCqklFdkeelmlkrt.e gg+g +s+ +E+v+++ + +++++p kl + e+ + + fj14406y3 1940 GGEG--KSN-----DEIVQELVASVQTRVPEKL--EMEGASESLFVKDlQ 1980 eikdPlfvVlvQEiermNkLlkeirrSLkeLdlglkGeltmsndlEelik + ++l++Vl QE++r+N Llk i++SL+ L +++ G ++ms+++E++++ fj14406y3 1981 GRLNSLTTVLGQEVDRFNNLLKLIHTSLETLNKAIAGFVVMSEEMEKVYN 2030 sLlngrVPaWDmWakksyPslkpLgsWvtDLlkRirQLqeWtedsGGAkl s ln++VPa W + +yPslkpLgsWv DL R+ + + W + fj14406y3 2031 SFLNNQVPA--LWSNTAYPSLKPLGSWVKDLILRTSFVDLWLKR------ 2072 glPkvvWLsGFFnPQsFLTAimQsvARknkwPLDkLcLdteVtkkekeeq g+Pk++W+sGFF+PQ FLT++ Q+ ARk+ +P+D+L + + V +++ fj14406y3 2073 GQPKSYWISGFFFPQGFLTGTLQNHARKYNLPIDELSFKYSVI----PTY 2118 dskep......................PedGvyVhGLfLEGArWDsktgl + + + ++ + +++ + + + ++PedGv VhG+f++ rWD k+++ fj14406y3 2119 RDQAAvieaaktvqfgqelpmdmelpsPEDGVLVHGMFMDASRWDDKEMV 2168 laeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvLSTT +++++p + +++PV+++ + + ++ y cP+Ykt aR g+LSTT fj14406y3 2169 IEDALPGQMNPVLPVVHFEPQQN--YKPSPTLYHCPLYKTGARAGTLSTT 2216 GHStnyvftfnLktkedtpaskWilaGVALllq<-* GHStn+v+t++L++k +++ Wi +G ALl+q fj14406y3 2217 GHSTNFVVTVLLPSKR--SKDYWIAKGSALLCQ 2247 //