hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-15153064/chunk_1/iprscan-20080810-15153064.nocrc
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Query sequence: fj14406y3
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  29.4    0.00049   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2     180   333 ..     1    92 []    28.0   0.0013
SM00382    2/2     531   689 ..     1    92 []     1.4       17

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 180 to 333: score 28.0, E = 0.0013
                   *->pgevvllvGppGsGKTTlaralarllgp....gviyidge....ggq
                       +++vl++G +G+GK+++a+ l++ ++++ +   +y++ + + ++++
   fj14406y3   180    VKHSVLFTGITGVGKSVIAKGLLNKIQEsagyVPVYLNFSaqtsSAR 226  

                   rirlalalark.............dvlllDEitslld.............
                    ++++  ++++++++  + +++++ v+++D++++   ++ +++   ++++
   fj14406y3   227 TQEIIESKLERkrknilgapgnkrIVIFVDDLNMPRLdrygsqppiellr 276  

                   .....................vtviattn.......dldpallrrrfdrr
                   + ++ ++  +++++  ++ ++vt+i ++ ++++++++  p+ +r+ +   
   fj14406y3   277 qyqdfggfydrnklfwkeiqdVTIISACAppgggrnPVTPRFIRHFSMLC 326  

                   ivllril<-*
                   + ++  +   
   fj14406y3   327 LPMPSEH    333  

SM00382: domain 2 of 2, from 531 to 689: score 1.4, E = 17
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...........
                        ++ llvG  G+GK  l r+ a+ +g +++ i ++++ + ++ +++
   fj14406y3   531    ERGNALLVGVGGTGKQSLTRLAAHICGYKCLQIELSrgynydsfhed 577  

                   .........................ggqrirlalalark....dvlllDE
                    ++  +  + ++++      + +   ++ ++++ ++++++  + +   DE
   fj14406y3   578 lrklykmagvedknmvflftdtqivVEEFLEDINNILNSgevpNLFEKDE 627  

                   itslld..............................vtviattndldpal
                   +   l   + + ++ + +++++++  +   ++ ++++++++ +    p  
   fj14406y3   628 LEQVLAatrprakevgisegnrdevfqyfiskvrqkLHIVLCMS---PVG 674  

                   lrrrfdrrivllril<-*
                    ++r+++r++  +++   
   fj14406y3   675 EAFRSRCRMFPSLVN    689  

//