hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-15342271/chunk_1/iprscan-20080810-15342271.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj14744
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00012.10.fs Hsp70 protein                                  405.0     1e-118   2
PF00012.10.ls Hsp70 protein                                  108.3    2.1e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00012.10.fs   1/2      34   300 ..     1   275 [.   282.9  5.7e-82
PF00012.10.ls   1/1      34   472 .]     1   618 []   108.3  2.1e-29
PF00012.10.fs   2/2     362   447 ..   298   384 ..   122.1  7.4e-34

Alignments of top-scoring domains:
PF00012.10.fs: domain 1 of 2, from 34 to 300: score 282.9, E = 5.7e-82
                   *->viGIDLGTTNScVAVm..eggkpevIaNaeGnRtTPSvVAFtkkGEr
                      viGIDLGTT++ V+V+ +  gk++vI ++ G    PS V+Ft++ ++
     fj14744    34    VIGIDLGTTYCSVGVFfpGTGKVKVIPDENGHISIPSMVSFTDN-DV 79   

                   LVGqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsn
                   +VG+     a +Np+NT++++KR+IG  f  +e +++i   P+kv ++ n
     fj14744    80 YVGYESVELADSNPQNTIYDAKRFIGKIFTAEELEAEIGRYPFKVLNK-N 128  

                   gdawveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPA
                   g +   v+   ++ + +Pe +++++L KlKe AEayLG +V +AVI VPA
     fj14744   129 GMVEFSVT-SNETITVSPEYVGSRLLLKLKEMAEAYLGMPVANAVISVPA 177  

                   YFNDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekern
                    F+  QR +T  A+  AGL +lR+iNEPTAAA+AYGL+K d        +
     fj14744   178 EFDLKQRNSTIEAANLAGLKILRVINEPTAAAMAYGLHKAD------VFH 221  

                   IlVfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlvee
                   +lV DLGGGT DVS+L  ++G F  +a +G + LGG DF +rl+++l ++
     fj14744   222 VLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQYLYKQ 271  

                   Fkkkegi..DlskdkrAlqRLreaAEKAKieL<-*
                      ++g  +  +++   + RLr+a E +K  L   
     fj14744   272 IYQTYGFvpSRKEE---IHRLRQAVEMVKLNL    300  

PF00012.10.ls: domain 1 of 1, from 34 to 472: score 108.3, E = 2.1e-29
                   *->viGIDLGTTNScVAVm..eggkpevIaNaeGnRtTPSvVAFtkkGEr
                      viGIDLGTT++ V+V+ +  gk++vI ++ G    PS V+Ft++ ++
     fj14744    34    VIGIDLGTTYCSVGVFfpGTGKVKVIPDENGHISIPSMVSFTDN-DV 79   

                   LVGqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsn
                   +VG+     a +Np+NT++++KR+IG  f  +e +++i   P+kv ++ n
     fj14744    80 YVGYESVELADSNPQNTIYDAKRFIGKIFTAEELEAEIGRYPFKVLNK-N 128  

                   gdawveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPA
                   g +   v+   ++ + +Pe +++++L KlKe AEayLG +V +AVI VPA
     fj14744   129 GMVEFSVT-SNETITVSPEYVGSRLLLKLKEMAEAYLGMPVANAVISVPA 177  

                   YFNDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekern
                    F+  QR +T  A+  AGL +lR+iNEPTAAA+AYGL+K d        +
     fj14744   178 EFDLKQRNSTIEAANLAGLKILRVINEPTAAAMAYGLHKAD------VFH 221  

                   IlVfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlvee
                   +lV DLGGGT DVS+L  ++G F  +a +G + LGG DF +rl+++l ++
     fj14744   222 VLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQYLYKQ 271  

                   Fkkkegi..DlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadad
                      ++g  +  +++   + RLr+a E +K  L   ++++ +    t+ ++
     fj14744   272 IYQTYGFvpSRKEE---IHRLRQAVEMVKLNLTLHQSAQLSV-LLTVEEQ 317  

                   G...........Pkh.............................lsetLt
                   +++++++++++ Pk++ ++ ++++ +++ +++ +++++++++  ++++++
     fj14744   318 DrkephssdtelPKDklssaddhrvnsgfgrglsdkksgesqvlFETEIS 367  

                   RAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTRIPaVqe
                   R  F+ L++dLf+++l P +++Lk   l+k +IdeVvLVGGsTRIP +++
     fj14744   368 RKLFDTLNEDLFQKILVPIQQVLKEGHLEKTEIDEVVLVGGSTRIPRIRQ 417  

                   lVkefFGGKePskgVNPDEAVAiGAAvQAGVLsGseeVkDvlLLDVtPLS
                   +++efFG K+P+++V+PD AV  G A+QAG+  G             P  
     fj14744   418 VIQEFFG-KDPNTSVDPDLAVVTGVAIQAGIDGG-----------SWP-- 453  

                   LGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqVlqGERela
                                                                     
     fj14744     - -------------------------------------------------- -    

                   kDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkDkgtgkeqk
                                                      l+VsA +        
     fj14744   454 -----------------------------------LQVSALEI------- 461  

                   ItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNeaEslvyste
                       +++                                           
     fj14744   462 ----PNKH------------------------------------------ 465  

                   kslkeeklgdkvseadkeklkkveeaiewLkealegeddAekeeikakte
                        +         +k              ++    +            
     fj14744   466 -----L---------QK--------------TNF---N------------ 472  

                   eLqkvvqkigekmyq<-*
                                     
     fj14744     - ---------------    -    

PF00012.10.fs: domain 2 of 2, from 362 to 447: score 122.1, E = 7.4e-34
                   *->lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGG
                      ++++++R  F+ L++dLf+++l P +++Lk   l+k +IdeVvLVGG
     fj14744   362    FETEISRKLFDTLNEDLFQKILVPIQQVLKEGHLEKTEIDEVVLVGG 408  

                   sTRIPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGV<-*
                   sTRIP ++++++efFG K+P+++V+PD AV  G A+QAG+   
     fj14744   409 STRIPRIRQVIQEFFG-KDPNTSVDPDLAVVTGVAIQAGI    447  

//