hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-15471033/chunk_1/iprscan-20080810-15471033.nocrc
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Query sequence: fj15056
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.ls Helix-loop-helix DNA-binding domain             75.6    1.5e-19   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             73.6    3.8e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1      38    96 ..     1    53 []    73.6  3.8e-19
PF00010.16.ls   1/1      38    96 ..     1    53 []    75.6  1.5e-19

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 38 to 96: score 73.6, E = 3.8e-19
                   *->rRrahnarERrRRdriNdafeeLrellPtla.......pskKlsKae
                      rRrah+ +E++RRd i+++++ L++++Pt +++++ +  s+KlsKa 
     fj15056    38    RRRAHTQAEQKRRDAIKRGYDDLQTIVPT-CqqqdfsiGSQKLSKAI 83   

                   iLrlAveYIksLq<-*
                   +L+++++YI++L+   
     fj15056    84 VLQKTIDYIQFLH    96   

PF00010.16.ls: domain 1 of 1, from 38 to 96: score 75.6, E = 1.5e-19
                   *->rRrahnarERrRRdriNdafeeLrellPtla.......pskKlsKae
                      rRrah+ +E++RRd i+++++ L++++Pt +++++ +  s+KlsKa 
     fj15056    38    RRRAHTQAEQKRRDAIKRGYDDLQTIVPT-CqqqdfsiGSQKLSKAI 83   

                   iLrlAveYIksLq<-*
                   +L+++++YI++L+   
     fj15056    84 VLQKTIDYIQFLH    96   

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