hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-15524438/chunk_1/iprscan-20080810-15524438.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj15089 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 291.4 1.6e-84 5 PF00028.8.fs Cadherin domain 285.4 9.9e-83 7 PF08266.2.fs Cadherin-like 154.2 1e-44 1 PF08266.2.ls Cadherin-like 156.2 7.7e-44 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 49 132 .. 1 84 [] 156.2 7.7e-44 PF08266.2.fs 1/1 49 132 .. 1 84 [] 154.2 1e-44 PF00028.8.fs 3/7 158 253 .. 1 107 [] 44.9 2.9e-12 PF00028.8.ls 1/5 158 253 .. 1 107 [] 46.8 6.9e-11 PF00028.8.fs 4/7 267 361 .. 1 107 [] 85.7 5.7e-24 PF00028.8.ls 2/5 267 361 .. 1 107 [] 87.6 3.6e-23 PF00028.8.fs 5/7 375 466 .. 1 107 [] 49.0 1.9e-13 PF00028.8.ls 3/5 375 466 .. 1 107 [] 50.9 4e-12 PF00028.8.ls 4/5 480 576 .. 1 107 [] 55.5 1.6e-13 PF00028.8.fs 6/7 480 576 .. 1 107 [] 53.6 9.1e-15 PF00028.8.fs 7/7 593 690 .. 1 107 [] 48.8 2.2e-13 PF00028.8.ls 5/5 593 690 .. 1 107 [] 50.6 4.7e-12 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 49 to 132: score 156.2, E = 7.7e-44 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gq++YSV+EE+++G+fVG +A+DLGL+++eL R +R++S+g+ ++ fj15089 49 GQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGRGGLL 95 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ++nl++G L+vn RiDREeLC +s+ C++hlev+++ fj15089 96 EVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDR 132 PF08266.2.fs: domain 1 of 1, from 49 to 132: score 154.2, E = 1e-44 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gq++YSV+EE+++G+fVG +A+DLGL+++eL R +R++S+g+ ++ fj15089 49 GQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGRGGLL 95 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ++nl++G L+vn RiDREeLC +s+ C++hlev+++ fj15089 96 EVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDR 132 PF00028.8.fs: domain 3 of 7, from 158 to 253: score 44.9, E = 2.9e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + s+ E p ++ +A+DaD g N+ ++Y++++++ F+ fj15089 158 KNLSIAESRPLDSRFPLEGASDAD--IGENALLTYRLSPNE---YFS 199 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg +++ + d+e +++ ++ ++k+LDREe +e L++ AtD+ g fj15089 200 LEK-PPDDELVkglgLILRKSLDREEA--PEIFLVLTATDG-------GK 239 pplsstatvtitVl<-* p l++t+++ itVl fj15089 240 PELTGTVQLLITVL 253 PF00028.8.ls: domain 1 of 5, from 158 to 253: score 46.8, E = 6.9e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + s+ E p ++ +A+DaD g N+ ++Y++++++ F+ fj15089 158 KNLSIAESRPLDSRFPLEGASDAD--IGENALLTYRLSPNE---YFS 199 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg +++ + d+e +++ ++ ++k+LDREe +e L++ AtD+ g fj15089 200 LEK-PPDDELVkglgLILRKSLDREEA--PEIFLVLTATDG-------GK 239 pplsstatvtitVl<-* p l++t+++ itVl fj15089 240 PELTGTVQLLITVL 253 PF00028.8.fs: domain 4 of 7, from 267 to 361: score 85.7, E = 5.7e-24 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +++ En+p+Gt v+ ++A+D D +g+Ng i+Ys++++ +++ + fj15089 267 YKVRLLENVPNGTLVIKLNASDLD--EGLNGDIVYSFSNDISpnvKS 311 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F+Idp tG+ i ++ +D Ee Ye++ve D g+ fj15089 312 KFHIDPITGQ----IIVKGYIDFEES--KSYEIIVEGIDK-------GQL 348 plsstatvtitVl<-* pls+ ++v+++V+ fj15089 349 PLSGHCRVIVEVE 361 PF00028.8.ls: domain 2 of 5, from 267 to 361: score 87.6, E = 3.6e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +++ En+p+Gt v+ ++A+D D +g+Ng i+Ys++++ +++ + fj15089 267 YKVRLLENVPNGTLVIKLNASDLD--EGLNGDIVYSFSNDISpnvKS 311 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F+Idp tG+ i ++ +D Ee Ye++ve D g+ fj15089 312 KFHIDPITGQ----IIVKGYIDFEES--KSYEIIVEGIDK-------GQL 348 plsstatvtitVl<-* pls+ ++v+++V+ fj15089 349 PLSGHCRVIVEVE 361 PF00028.8.fs: domain 5 of 7, from 375 to 466: score 49.0, E = 1.9e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s ++E+ap Gt ++ + ++D+D g Ng ++ s++++ p + + fj15089 375 LSLPIREDAPLGTVIALISVSDKD--MGVNGLVTCSLTSHVPFKLVS 419 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + LDRE+ + YeL+v A+D+ g+p+l fj15089 420 TFKNYYS----LVLDSALDRESV--SAYELVVTARDG-------GSPSLW 456 statvtitVl<-* +ta+v ++V fj15089 457 ATASVSVEVA 466 PF00028.8.ls: domain 3 of 5, from 375 to 466: score 50.9, E = 4e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s ++E+ap Gt ++ + ++D+D g Ng ++ s++++ p + + fj15089 375 LSLPIREDAPLGTVIALISVSDKD--MGVNGLVTCSLTSHVPFKLVS 419 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + LDRE+ + YeL+v A+D+ g+p+l fj15089 420 TFKNYYS----LVLDSALDRESV--SAYELVVTARDG-------GSPSLW 456 statvtitVl<-* +ta+v ++V fj15089 457 ATASVSVEVA 466 PF00028.8.ls: domain 4 of 5, from 480 to 576: score 55.5, E = 1.6e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v+En p+G ++ tv A DaD N+ ++Ys+++ ++++ fj15089 480 YTVFVKENNPPGCHIFTVSAWDAD--AQENALVSYSLVERRVgeral 524 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +++ ++G ++ +pLD Ee + + v A+Da g fj15089 525 SSYVSVHAESGK----VYALQPLDHEEL--ELLQFQVTARDA-------G 561 gpplsstatvtitVl<-* ppl s +t+ + Vl fj15089 562 VPPLGSNVTLQVFVL 576 PF00028.8.fs: domain 6 of 7, from 480 to 576: score 53.6, E = 9.1e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v+En p+G ++ tv A DaD N+ ++Ys+++ ++++ fj15089 480 YTVFVKENNPPGCHIFTVSAWDAD--AQENALVSYSLVERRVgeral 524 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +++ ++G ++ +pLD Ee + + v A+Da g fj15089 525 SSYVSVHAESGK----VYALQPLDHEEL--ELLQFQVTARDA-------G 561 gpplsstatvtitVl<-* ppl s +t+ + Vl fj15089 562 VPPLGSNVTLQVFVL 576 PF00028.8.fs: domain 7 of 7, from 593 to 690: score 48.8, E = 2.2e-13 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnp. + v+E +p + +vG v+ v+A+DaD +g N+ ++Y + +g + fj15089 593 TGGAVSELVPwsvgVGHVVAKVRAVDAD--SGYNAWLSYELQPGTGg 637 .ggwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllas + Fr+ +tG+ istt+ LD +++++++L v+++D+ fj15089 638 aRIPFRVGLYTGE----ISTTRALDE---TdAPRHRLLVLVKDH------ 674 gggpplsstatvtitVl<-* g+p+l++tatv +++ fj15089 675 -GEPALTATATVLVSLV 690 PF00028.8.ls: domain 5 of 5, from 593 to 690: score 50.6, E = 4.7e-12 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnp. + v+E +p + +vG v+ v+A+DaD +g N+ ++Y + +g + fj15089 593 TGGAVSELVPwsvgVGHVVAKVRAVDAD--SGYNAWLSYELQPGTGg 637 .ggwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllas + Fr+ +tG+ istt+ LD +++++++L v+++D+ fj15089 638 aRIPFRVGLYTGE----ISTTRALDE---TdAPRHRLLVLVKDH------ 674 gggpplsstatvtitVl<-* g+p+l++tatv +++ fj15089 675 -GEPALTATATVLVSLV 690 //