hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-15524438/chunk_1/iprscan-20080810-15524438.nocrc
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Query sequence: fj15089
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 456.6   1.3e-132   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      65   151 ..     1   121 []    16.1    0.063
SM00112    2/6     175   260 ..     1   121 []    84.1  1.7e-20
SM00112    3/6     284   368 ..     1   121 []    96.4  3.4e-24
SM00112    4/6     392   473 ..     1   121 []    92.5  5.1e-23
SM00112    5/6     497   583 ..     1   121 []   101.5    1e-25
SM00112    6/6     614   696 ..     1   121 []    66.1  4.4e-15

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 65 to 151: score 16.1, E = 0.063
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  +  D g   e ++      ++ ++ +  ++++++l +++ ++G 
     fj15089    65    VGRIAQDLG--LELAE------LVPRLFRvaskgrggLLEVNLQNG- 102  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                             i++++ ++DREe +++      +e ++  e+         
     fj15089   103 ----------ILFVNSRIDREELCRRS-----AECSIHLEVIVDR----- 132  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                      v v+V D+NDN+P   
     fj15089   133 -------------PLQVFHVDVEVRDINDNPP    151  

SM00112: domain 2 of 6, from 175 to 260: score 84.1, E = 1.7e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                        A+DaD g   eN+       +tY+++++++Fs+++        Lv
     fj15089   175    EGASDADIG---ENAL------LTYRLSPneYFSLEKPPDDE---LV 209  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                   k  + i  + +LDREe          +e  L+ +AtDgG p         
     fj15089   210 KGLGLILRK-SLDREEA---------PEIFLVLTATDGGKPE-------- 241  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l++t+++ +tVlD NDNaP   
     fj15089   242 -------LTGTVQLLITVLDANDNAP    260  

SM00112: domain 3 of 6, from 284 to 368: score 96.4, E = 3.4e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++A+D+D+g    Ng+      ++Ys++++ +++ +++F+Idp tG 
     fj15089   284    LNASDLDEG---LNGD------IVYSFSNdispnvksKFHIDPITG- 320  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                             +i++++ +D+Ee          ++Y+++ve  D+G+ p  
     fj15089   321 ----------QIIVKGYIDFEES---------KSYEIIVEGIDKGQLP-- 349  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                ls+++ v+v+V+D NDN P   
     fj15089   350 -------------LSGHCRVIVEVEDNNDNVP    368  

SM00112: domain 4 of 6, from 392 to 473: score 92.5, E = 5.1e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s++D+D g    Ng       vt+s++s+ +F++ ++  +      
     fj15089   392    ISVSDKDMG---VNGL------VTCSLTShvPFKLVSTFKN------ 423  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ +++  +LDRE+          s Y+L+v+A+DgG+p+        
     fj15089   424 --YYSLVLDSALDRESV---------SAYELVVTARDGGSPS-------- 454  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l +ta+v v+V DvNDNaP   
     fj15089   455 -------LWATASVSVEVADVNDNAP    473  

SM00112: domain 5 of 6, from 497 to 583: score 101.5, E = 1e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsA DaD+    eN+       v+Ys+++++ +++  +++ s+++e+
     fj15089   497    VSAWDADAQ---ENAL------VSYSLVErrvgeralssYVSVHAES 534  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            +++++pLD+Ee          +  +++v+A+D+G pp
     fj15089   535 G-----------KVYALQPLDHEEL---------ELLQFQVTARDAGVPP 564  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  l s++t++v+VlD+NDNaP   
     fj15089   565 ---------------LGSNVTLQVFVLDENDNAP    583  

SM00112: domain 6 of 6, from 614 to 696: score 66.1, E = 4.4e-15
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+A+DaDsg    N++      ++Y++ +++++ + +F++   tG  
     fj15089   614    VRAVDADSG---YNAW------LSYELQPgtggariPFRVGLYTG-- 649  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+tt++LD  +          ++++L v ++D+G+p    
     fj15089   650 ---------EISTTRALDETDA---------PRHRLLVLVKDHGEPA--- 678  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l++tatv v ++     aP   
     fj15089   679 ------------LTATATVLVSLVE-SGQAP    696  

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