hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16045756/chunk_1/iprscan-20080810-16045756.nocrc
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Query sequence: fj15240
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 297.1    1.3e-84   1
SM00219                                                 101.8    7.9e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      78   352 ..     1   280 []   101.8  7.9e-26
SM00220    1/1      78   352 ..     1   231 []   297.1  1.3e-84

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 78 to 352: score 101.8, E = 7.9e-26
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE
                       +l +++G+Ga  +V  +   +++++VA+K ++ ++ ++++ e+l+E
     fj15240    78    YELQEVIGSGATAVVQAAYCApkkEKVAIKRINLEKcqtsMDELLKE 124  

                   akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL
                   ++ M++   +HpNiV  +   + +       + l++vm + +gG+ ld +
     fj15240   125 IQAMSQC--HHPNIVSYYTSFVVK-------DELWLVMKLLSGGSVLDII 165  

                   rknrpk........lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcL
                    k+   +++++++ l  s+   +   + +G eYL++++ +HRD  A N+L
     fj15240   166 -KHIVAkgehksgvLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNIL 214  

                   vgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                   +ge++ v I+DFG s +l  +      +d  r k    + ++    WmAP
     fj15240   215 LGEDGSVQIADFGVSAFLATG------GDITRNKV--RKTFVGTPCWMAP 256  

                   Esl..kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevley
                   E++++  g + +k D+WSFG++  E+ t  ++ +        + + ++  
     fj15240   257 EVMeqVRG-YDFKADIWSFGITAIELATGAAPYHKY-----PPMKVLMLT 300  

                   lkkGyRlpkPendl...p.iSsvtCPdelYd.lMlqCWaedPedRPtFse
                   l++   +p  e + ++++ +       + ++++++ C + dPe+RPt +e
     fj15240   301 LQND--PPSLETGVqdkEmL---KKYGKSFRkMISLCLQKDPEKRPTAAE 345  

                   l..verl<-*
                   l +++++   
     fj15240   346 LlrHKFF    352  

SM00220: domain 1 of 1, from 78 to 352: score 297.1, E = 1.3e-84
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE
                      Yel +++G+Ga ++V  a+    +++vAiK+i+ ++ +++ + +l+E
     fj15240    78    YELQEVIGSGATAVVQAAYCAPKKEKVAIKRINlekcqtsmDELLKE 124  

                   ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg
                   i+ +++ +HPNIV +y +f+ +d+l+lVm +++G  G+++d++k+   +g
     fj15240   125 IQAMSQcHHPNIVSYYTSFVVkDELWLVMKLLSG--GSVLDIIKHIVAKG 172  

                   lrk..vlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                    +k++vl+E++++ ++r++l++LeYLH++g iHRD+K  NiLL +++ v 
     fj15240   173 EHKsgVLDEsTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEdgSVQ 222  

                   laDFGlArql............ttfvGTpeYmAPEvl....gYgkpavDi
                   +aDFG++++l ++++ ++++ ++tfvGTp +mAPEv+++ +gY++ ++Di
     fj15240   223 IADFGVSAFLatggditrnkvrKTFVGTPCWMAPEVMeqvrGYDF-KADI 271  

                   WSlGcilyElltGkpPFp..qldlifkkig....................
                   WS+G++ +El+tG  P+++  +++++ + + +++++ +++  +++  +++
     fj15240   272 WSFGITAIELATGAAPYHkyPPMKVLMLTLqndppsletgvqdkemlkky 321  

                   SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                    ++++ +i+ +L+kdPekR+ta e+L+       H ff   
     fj15240   322 GKSFRKMISLCLQKDPEKRPTAaELLR-------HKFF    352  

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