hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16105961/chunk_1/iprscan-20080810-16105961.nocrc
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Query sequence: fj15254
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF05729.3.fs NACHT domain                                 281.6    4.7e-83   1
PF05729.3.ls NACHT domain                                 283.4      4e-82   1
PF02758.6.ls PAAD/DAPIN/Pyrin domain                      129.3    9.8e-36   1
PF02758.6.fs PAAD/DAPIN/Pyrin domain                      127.3      4e-35   1
PF00560.23.ls Leucine Rich Repeat                           57.6    3.7e-14   8
PF00560.23.fs Leucine Rich Repeat                           44.1    5.2e-11   6

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF02758.6.fs   1/1      10    93 ..     1    83 []   127.3    4e-35
PF02758.6.ls   1/1      10    93 ..     1    83 []   129.3  9.8e-36
PF05729.3.fs   1/1     224   393 ..     1   205 []   281.6  4.7e-83
PF05729.3.ls   1/1     224   393 ..     1   205 []   283.4    4e-82
PF00560.23.ls   2/8     746   769 ..     1    24 []    12.1      1.4
PF00560.23.ls   4/8     803   829 ..     1    24 []    10.4        3
PF00560.23.ls   6/8     860   883 ..     1    24 []    10.6      2.8
PF00560.23.ls   8/8     917   937 ..     1    24 []     8.5      6.9

Alignments of top-scoring domains:
PF02758.6.fs: domain 1 of 1, from 10 to 93: score 127.3, E = 4e-35
                   *->krilLlkyLEeLndeeLkkFKslLk.tplekgdlkIpwgelekadri
                      +r+ L  yLE+L+d +LkkFK++L+++p++kg++++p+g+ ekad++
     fj15254    10    TRCKLARYLEDLEDVDLKKFKMHLEdYPPQKGCIPLPRGQTEKADHV 56   

                   dlAdlLvekygedaAwdvtlkifekinlrdLaekLqr<-*
                   dlA+l++++ ge++Aw ++++if +in+rdL ek++r   
     fj15254    57 DLATLMIDFNGEEKAWAMAVWIFAAINRRDLYEKAKR    93   

PF02758.6.ls: domain 1 of 1, from 10 to 93: score 129.3, E = 9.8e-36
                   *->krilLlkyLEeLndeeLkkFKslLk.tplekgdlkIpwgelekadri
                      +r+ L  yLE+L+d +LkkFK++L+++p++kg++++p+g+ ekad++
     fj15254    10    TRCKLARYLEDLEDVDLKKFKMHLEdYPPQKGCIPLPRGQTEKADHV 56   

                   dlAdlLvekygedaAwdvtlkifekinlrdLaekLqr<-*
                   dlA+l++++ ge++Aw ++++if +in+rdL ek++r   
     fj15254    57 DLATLMIDFNGEEKAWAMAVWIFAAINRRDLYEKAKR    93   

PF05729.3.fs: domain 1 of 1, from 224 to 393: score 281.6, E = 4.7e-83
                   *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr
                      +tv+ qG+AG+GKT+L++k++l+Wa+g l+qd+fd++F+++cre s 
     fj15254   224    HTVVFQGAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSL 270  

                   sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL
                    +       sL dl+ s++p+p +p+ +             i++ p r+L
     fj15254   271 VTQR-----SLGDLIMSCCPDPNPPIHK-------------IVRKPSRIL 302  

                   kSalllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLssLl
                               +++DG+DEl+ ++++++g+lctdw+++ ++++LLssL+
     fj15254   303 ------------FLMDGFDELQGAFDEHIGPLCTDWQKAERGDILLSSLI 340  

                   rkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrkey
                   rkkLLP+asll+T+RP+al++  l+++l +p   r++e++gFse  rkey
     fj15254   341 RKKLLPEASLLITTRPVALEK--LQHLLDHP---RHVEILGFSEAKRKEY 385  

                   vrkyfsde<-*
                   + kyfsde   
     fj15254   386 FFKYFSDE    393  

PF05729.3.ls: domain 1 of 1, from 224 to 393: score 283.4, E = 4e-82
                   *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr
                      +tv+ qG+AG+GKT+L++k++l+Wa+g l+qd+fd++F+++cre s 
     fj15254   224    HTVVFQGAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSL 270  

                   sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL
                    +       sL dl+ s++p+p +p+ +             i++ p r+L
     fj15254   271 VTQR-----SLGDLIMSCCPDPNPPIHK-------------IVRKPSRIL 302  

                   kSalllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLssLl
                               +++DG+DEl+ ++++++g+lctdw+++ ++++LLssL+
     fj15254   303 ------------FLMDGFDELQGAFDEHIGPLCTDWQKAERGDILLSSLI 340  

                   rkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrkey
                   rkkLLP+asll+T+RP+al++  l+++l +p   r++e++gFse  rkey
     fj15254   341 RKKLLPEASLLITTRPVALEK--LQHLLDHP---RHVEILGFSEAKRKEY 385  

                   vrkyfsde<-*
                   + kyfsde   
     fj15254   386 FFKYFSDE    393  

PF00560.23.ls: domain 2 of 8, from 746 to 769: score 12.1, E = 1.4
                   *->nLeeLdLsgCNpsltgs..lpssl.nl<-*
                      +L+eLdLs+ N sl g++++ + ++ l   
     fj15254   746    SLTELDLSD-N-SL-GDpgMRVLCeTL    769  

PF00560.23.ls: domain 4 of 8, from 803 to 829: score 10.4, E = 3
                   *->nLeeLdLsgCNpsltgs.....lpssl.nl<-*
                      +L eLdLs+ N  l g+ +   l ++l++l   
     fj15254   803    KLVELDLSD-N-AL-GDfgirlLCVGLkHL    829  

PF00560.23.ls: domain 6 of 8, from 860 to 883: score 10.6, E = 2.8
                   *->nLeeLdLsgCNpsltgs..lpssl.nl<-*
                      nL++L+L+g N  l g++++   +++l   
     fj15254   860    NLTHLYLRG-N-TL-GDkgIKLLCeGL    883  

PF00560.23.ls: domain 8 of 8, from 917 to 937: score 8.5, E = 6.9
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L++L+L++ N  l g+l +    +   
     fj15254   917    SLRKLSLGN-N-DL-GDLGV-MmFC    937  

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