hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16105961/chunk_1/iprscan-20080810-16105961.nocrc
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Query sequence: fj15254
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00368                                                 178.1    8.4e-49   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00368    1/7     744   771 ..     1    28 []    42.1  7.4e-08
SM00368    2/7     773   800 ..     1    28 []     6.1       36
SM00368    3/7     801   828 ..     1    28 []    41.8  8.9e-08
SM00368    4/7     830   857 ..     1    28 []     6.4       33
SM00368    5/7     858   885 ..     1    28 []    36.9  2.8e-06
SM00368    6/7     887   914 ..     1    28 []     4.1       70
SM00368    7/7     915   942 ..     1    28 []    40.7    2e-07

Alignments of top-scoring domains:
SM00368: domain 1 of 7, from 744 to 771: score 42.1, E = 7.4e-08
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++sL eLdLs+N lgd G+r+L+e+L++   
     fj15254   744    SQSLTELDLSDNSLGDPGMRVLCETLQH    771  

SM00368: domain 2 of 7, from 773 to 800: score 6.1, E = 36
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       +++r+L+L+ ++l  e +  ++ +L+s   
     fj15254   773    GCNIRRLWLGRCGLSHECCFDISLVLSS    800  

SM00368: domain 3 of 7, from 801 to 828: score 41.8, E = 8.9e-08
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n++L eLdLs+N lgd G+r L+ +Lk+   
     fj15254   801    NQKLVELDLSDNALGDFGIRLLCVGLKH    828  

SM00368: domain 4 of 7, from 830 to 857: score 6.4, E = 33
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +++L++L+L n +l+   + aL+++L+    
     fj15254   830    LCNLKKLWLVNSGLTSVCCSALSSVLST    857  

SM00368: domain 5 of 7, from 858 to 885: score 36.9, E = 2.8e-06
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n++L  L+L++N+lgd+G++ L+e+L +   
     fj15254   858    NQNLTHLYLRGNTLGDKGIKLLCEGLLH    885  

SM00368: domain 6 of 7, from 887 to 914: score 4.1, E = 70
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       ++L++L L n++l+   +  L+ +L+s   
     fj15254   887    DCKLQVLELDNCNLTSHCCWDLSTLLTS    914  

SM00368: domain 7 of 7, from 915 to 942: score 40.7, E = 2e-07
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++sLr+L+L+nN+lgd G++ ++e+Lk+   
     fj15254   915    SQSLRKLSLGNNDLGDLGVMMFCEVLKQ    942  

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