hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-16173342/chunk_1/iprscan-20080810-16173342.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj15275 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00102.17.ls Protein-tyrosine phosphatase 661.6 5.7e-196 2 PF00102.17.fs Protein-tyrosine phosphatase 660.0 1.8e-195 2 PF00041.11.ls Fibronectin type III domain 110.3 5.3e-30 3 PF00041.11.fs Fibronectin type III domain 104.3 2.6e-29 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00041.11.fs 1/3 93 178 .. 1 84 [] 39.0 1.4e-10 PF00041.11.ls 1/3 93 178 .. 1 84 [] 41.0 3.8e-09 PF00041.11.ls 2/3 190 282 .. 1 84 [] 13.3 0.0068 PF00041.11.ls 3/3 293 386 .. 1 84 [] 56.0 1.2e-13 PF00041.11.fs 3/3 293 386 .. 1 84 [] 54.0 7.4e-15 PF00102.17.ls 1/2 710 940 .. 1 275 [] 401.3 1.3e-117 PF00102.17.fs 1/2 720 940 .. 11 275 .] 401.5 1.2e-117 PF00102.17.fs 2/2 1000 1235 .. 1 275 [] 258.5 1.3e-74 PF00102.17.ls 2/2 1000 1235 .. 1 275 [] 260.3 3.6e-75 Alignments of top-scoring domains: PF00041.11.fs: domain 1 of 3, from 93 to 178: score 39.0, E = 1.4e-10 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P + ++ ++t+l ++ + + g+gpi + e++yR +++g+ fj15275 93 PTPIAPPQLLRAGPTYLIIQLNTNSiiGDGPIVRKEIEYR-MARGP- 137 wkelt.vpgtttsytltgLkPgteYtvrVq.AvnggG..GpeS<-* w e+ v+ +t y l L P+teY+++V ++ g+G++G++ fj15275 138 WAEVHaVSLQT--YKLWHLDPDTEYEISVLlTRPGDGgtGRPG 178 PF00041.11.ls: domain 1 of 3, from 93 to 178: score 41.0, E = 3.8e-09 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P + ++ ++t+l ++ + + g+gpi + e++yR +++g+ fj15275 93 PTPIAPPQLLRAGPTYLIIQLNTNSiiGDGPIVRKEIEYR-MARGP- 137 wkelt.vpgtttsytltgLkPgteYtvrVq.AvnggG..GpeS<-* w e+ v+ +t y l L P+teY+++V ++ g+G++G++ fj15275 138 WAEVHaVSLQT--YKLWHLDPDTEYEISVLlTRPGDGgtGRPG 178 PF00041.11.ls: domain 2 of 3, from 190 to 282: score 13.3, E = 0.0068 *->P.saPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge. P aP++l + ++++ ltl+W+p gY+vt +++ + + fj15275 190 PmRAPKGLAFAEIQARQLTLQWEPL-------GYNVTR-CHTYTVSl 228 wkeltvpgt..............ttsytltgLkPgteYtvrVqAvnggG. + ++t+ ++++++ ++ +++++ ++yt+++L P+++ +vr++ n +G+ fj15275 229 CYHYTLGSShnqtirecvkteqgVSRYTIKNLLPYRNVHVRLVLTNPEGr 278 GpeS<-* + fj15275 279 KEGK 282 PF00041.11.ls: domain 3 of 3, from 293 to 386: score 56.0, E = 1.2e-13 *->PsaPtnltvtdv.tstsltlsWspPt.gngpitgYevtyRqpkngge Ps + t ++ ++ + l W+ P ++ng it Ye+ y q+ +++ fj15275 293 PSGIAAESLTFTpLEDMIFLKWEEPQePNGLITQYEISY-QSIESSD 338 ........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<- + + +++ ++++ +++t +++++L Pgt+Y ++V+A++g+G G+ fj15275 339 pavnvpgpRRTISKLRNETYHVFSNLHPGTTYLFSVRARTGKGfGQAA 386 * fj15275 - - PF00041.11.fs: domain 3 of 3, from 293 to 386: score 54.0, E = 7.4e-15 *->PsaPtnltvtdv.tstsltlsWspPt.gngpitgYevtyRqpkngge Ps + t ++ ++ + l W+ P ++ng it Ye+ y q+ +++ fj15275 293 PSGIAAESLTFTpLEDMIFLKWEEPQePNGLITQYEISY-QSIESSD 338 ........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<- + + +++ ++++ +++t +++++L Pgt+Y ++V+A++g+G G+ fj15275 339 pavnvpgpRRTISKLRNETYHVFSNLHPGTTYLFSVRARTGKGfGQAA 386 * fj15275 - - PF00102.17.ls: domain 1 of 2, from 710 to 940: score 401.3, E = 1.3e-117 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv + R ++yD+ RVkL+p+ gd++ DYINA+yidg fj15275 710 KVKGSRQEPMPAYDRHRVKLHPMLGDPNADYINANYIDG-------- 748 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y++++++IaTQgP+p+ + DFWrMvw++++++IVM+t+lvE gr +K C fj15275 749 YHRSNHFIATQGPKPEMVYDFWRMVWQEHCSSIVMITKLVEVGR--VK-C 795 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina ++YWPe +s tyGdi++ lv++e++a+y+vRt+ l+ +g fj15275 796 SRYWPE-----DSDTYGDIKIMLVKTETLAEYVVRTFALERrGY------ 834 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg + +++V++fh+t+WP+hgvP + +++ll ++r+v+ s+p fj15275 835 -----SARHEVRQFHFTAWPEHGVPYH-ATGLLAFIRRVKASTP------ 872 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf pd+g Piv+HCSAG GRTG++i++d++l++ e+eg+v d++ fj15275 873 ---PDAG-------PIVIHCSAGTGRTGCYIVLDVMLDMAECEGVV-DIY 911 diVkelRsqRpgmVQteeQYiFlydaile<-* ++Vk+l+s R +m+QteeQYiF++daile fj15275 912 NCVKTLCSRRVNMIQTEEQYIFIHDAILE 940 PF00102.17.fs: domain 1 of 2, from 720 to 940: score 401.5, E = 1.2e-117 *->lpyDhtRVkLkpipgdedsDYINAsyidgpivrllvvykkpkayIaT ++yD+ RVkL+p+ gd++ DYINA+yidg y++++++IaT fj15275 720 PAYDRHRVKLHPMLGDPNADYINANYIDG--------YHRSNHFIAT 758 QgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtCaqYWPeeske QgP+p+ + DFWrMvw++++++IVM+t+lvE gr +K C++YWPe fj15275 759 QGPKPEMVYDFWRMVWQEHCSSIVMITKLVEVGR--VK-CSRYWPE---- 801 ggsltyGditVtlvseekeadytvRtleltn.gdgskinakqekkgetrt +s tyGdi++ lv++e++a+y+vRt+ l+ +g + +++ fj15275 802 -DSDTYGDIKIMLVKTETLAEYVVRTFALERrGY-----------SARHE 839 VthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelgerspdsgprS V++fh+t+WP+hgvP + +++ll ++r+v+ s+p pd+g fj15275 840 VRQFHFTAWPEHGVPYH-ATGLLAFIRRVKASTP---------PDAG--- 876 ystaPivVHCSAGvGRTGtfiaidillqqleaegevidvfdiVkelRsqR Piv+HCSAG GRTG++i++d++l++ e+eg+v d++++Vk+l+s R fj15275 877 ----PIVIHCSAGTGRTGCYIVLDVMLDMAECEGVV-DIYNCVKTLCSRR 921 pgmVQteeQYiFlydaile<-* +m+QteeQYiF++daile fj15275 922 VNMIQTEEQYIFIHDAILE 940 PF00102.17.fs: domain 2 of 2, from 1000 to 1235: score 258.5, E = 1.3e-74 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNR+ d+lp D++ L ++ ++++ +YINA d+ fj15275 1000 NRDKNRSMDVLPPDRCLPFLIST-DGDSNNYINAALTDS-------- 1037 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKt. y+++ a+I+T +Pl++T DFWr v+++++t+IVML++l + + fj15275 1038 YTRSAAFIVTLHPLQSTTPDFWRLVYDYGCTSIVMLNQLNQSNS----Aw 1083 .CaqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgski +C qYWPe g ++yG ++V+ +s + ++d + R+++++n + fj15275 1084 pCLQYWPE----PGRQQYGLMEVEFMSGTADEDLVARVFRVQNiSR---- 1125 nakqekkgetrtVthfhytgWPDh.gvPesgpkslldllrkvrksqpsnv q + + V+hf+++ W ++++P+s+ k++l ll +v k+q fj15275 1126 --LQ---EGHLLVRHFQFLRWSAYrDTPDSK-KAFLHLLAEVDKWQA--- 1166 elgerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevi +++g ++VHC +G GR+Gtf+a ++l+++++++ v fj15275 1167 -----ESGDG-------RTIVHCLNGGGRSGTFCACATVLEMIRCHNLV- 1203 dvfdiVkelRsqRpgmVQteeQYiFlydaile<-* dvf + k+lR+ p+mV+t +QY F+yd+ le fj15275 1204 DVFFAAKTLRNYKPNMVETMDQYHFCYDVALE 1235 PF00102.17.ls: domain 2 of 2, from 1000 to 1235: score 260.3, E = 3.6e-75 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNR+ d+lp D++ L ++ ++++ +YINA d+ fj15275 1000 NRDKNRSMDVLPPDRCLPFLIST-DGDSNNYINAALTDS-------- 1037 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKt. y+++ a+I+T +Pl++T DFWr v+++++t+IVML++l + + fj15275 1038 YTRSAAFIVTLHPLQSTTPDFWRLVYDYGCTSIVMLNQLNQSNS----Aw 1083 .CaqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgski +C qYWPe g ++yG ++V+ +s + ++d + R+++++n + fj15275 1084 pCLQYWPE----PGRQQYGLMEVEFMSGTADEDLVARVFRVQNiSR---- 1125 nakqekkgetrtVthfhytgWPDh.gvPesgpkslldllrkvrksqpsnv q + + V+hf+++ W ++++P+s+ k++l ll +v k+q fj15275 1126 --LQ---EGHLLVRHFQFLRWSAYrDTPDSK-KAFLHLLAEVDKWQA--- 1166 elgerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevi +++g ++VHC +G GR+Gtf+a ++l+++++++ v fj15275 1167 -----ESGDG-------RTIVHCLNGGGRSGTFCACATVLEMIRCHNLV- 1203 dvfdiVkelRsqRpgmVQteeQYiFlydaile<-* dvf + k+lR+ p+mV+t +QY F+yd+ le fj15275 1204 DVFFAAKTLRNYKPNMVETMDQYHFCYDVALE 1235 //