hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-16173342/chunk_1/iprscan-20080810-16173342.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj15275 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00194 696.7 6.7e-205 2 SM00404 241.2 8.8e-68 2 SM00060 92.4 5.5e-23 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00060 1/3 92 175 .. 1 69 [] 22.7 0.051 SM00060 2/3 191 279 .. 1 69 [] 26.3 0.0044 SM00060 3/3 295 383 .. 1 69 [] 43.4 3e-08 SM00194 1/2 690 943 .. 1 308 [] 374.3 7.2e-108 SM00404 1/2 839 940 .. 1 92 [] 147.9 1e-39 SM00194 2/2 972 1238 .. 1 308 [] 322.3 3.2e-92 SM00404 2/2 1132 1235 .. 1 92 [] 93.3 2.9e-23 Alignments of top-scoring domains: SM00060: domain 1 of 3, from 92 to 175: score 22.7, E = 0.051 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg P+ P p +++ ++t + ++ + + ++++ ++++ fj15275 92 PPTPIAP--PQLLRAGPT------YLIIQLNTNsiigdgpivrkEIE 130 Yr................ytltgLkPgaepwteYefrVrAvngndaGeg< Yr ++++ ++ ++ ++y+l +L P+ teYe++V +d+G g fj15275 131 YRmargpwaevhavslqtYKLWHLDPD----TEYEISVLLTRPGDGGTG 175 -* fj15275 - - SM00060: domain 2 of 3, from 191 to 279: score 26.3, E = 0.0044 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... +P++ l + ++ ++ ++tl+Wep +++++++++ +++ fj15275 191 MRAPKG---LAFAEIQAR------QLTLQWEPLgynVTRCHtytvsl 228 ..........................ytltgLkPgaepwteYefrVrAvn + +++ +++ ++ +++++++++yt+++L P+ + ++r++ n fj15275 229 cyhytlgsshnqtirecvkteqgvsrYTIKNLLPY----RNVHVRLVLTN 274 gndaGeg<-* G+ fj15275 275 P--EGRK 279 SM00060: domain 3 of 3, from 295 to 383: score 43.4, E = 3e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... + + l++t+ + + l+We+P ++++ i++Y+ + fj15275 295 GIAAES---LTFTPLED-------MIFLKWEEPqepnglITQYEisy 331 ...........................ytltgLkPgaepwteYefrVrAv ++ +++++ +++++++++ ++ ++++ +++++L+Pg t+Y f+VrA+ fj15275 332 qsiessdpavnvpgprrtisklrnetyHVFSNLHPG----TTYLFSVRAR 377 ngndaGeg<-* +g +G g fj15275 378 TG--KGFG 383 SM00194: domain 1 of 2, from 690 to 943: score 374.3, E = 7.2e-108 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi g+++E+e+ + +++ ++ + ++e fj15275 690 GFKQEYESFFEGWDATKKK------DKVKGSRQE-----------PM 719 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT ++yD+ RVkL+p g+ ++ DYINAnyidgy++++ +IaTQGP+p+ fj15275 720 PAYDRHRVKLHPMLGD----PNADYINANYIDGYHRSNHFIATQGPKPEM 765 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPeesltyG v DFWrMVw++++++IVM+t+lvE gr+KC +YWPe+s tyG fj15275 766 VYDFWRMVWQEHCSSIVMITKLVEV--------GRVKCSRYWPEDSDTYG 807 ditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytnW di++ lv++e+l+ +y++Rt+ ++ g s ++V+++h+t+W fj15275 808 DIKIMLVKTETLA-EYVVRTFALERRGY--------SARHEVRQFHFTAW 848 PDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPiv P+hgvP ++++ll+f+r+v++s + +gPiv fj15275 849 PEHGVPYHATGLLAFIRRVKASTPPD-------------------AGPIV 879 VHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTee +HCSAG GRTG++i++d++l++ e+++ vdi+++Vk+l s R +m+QTee fj15275 880 IHCSAGTGRTGCYIVLDVMLDMAECegvVDIYNCVKTLCSRRVNMIQTEE 929 QYiFlyraileylk<-* QYiF+++aile ++ fj15275 930 QYIFIHDAILEACL 943 SM00404: domain 1 of 2, from 839 to 940: score 147.9, E = 1e-39 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +v+++h+t+Wp+h gvP++ ++l f+r+v+++++++ +Piv+ fj15275 839 EVRQFHFTAWPEH-----GVPYhaTGLLAFIRRVKAstppdagPIVI 880 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAG GRTG+++++d++l++ + ++ vdi+++vk l s R +m+qteeQ fj15275 881 HCSAGTGRTGCYIVLDVMLDMaecegvVDIYNCVKTLCSRRVNMIQTEEQ 930 YlFlyralle<-* Y+F+++a+le fj15275 931 YIFIHDAILE 940 SM00194: domain 2 of 2, from 972 to 1238: score 322.3, E = 3.2e-92 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi +l+eEf++l ++tp++ ++ +c++a lp Nr +KNR+ d+ fj15275 972 QLREEFQTLNSVTPPLDVE------ECSIALLPRNR--DKNRSM-DV 1009 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT lp D++ L ++dg +++YINA d+y ++ a+I+T +PL+sT fj15275 1010 LPPDRCLPFLISTDG-----DSNNYINAALTDSYTRSAAFIVTLHPLQST 1054 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty DFWr V+++++++IVML++l+ + C qYWPe + ++y fj15275 1055 TPDFWRLVYDYGCTSIVMLNQLNQS-------NSAWPCLQYWPEPgRQQY 1097 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G ++V+++s + + d + R+++v+n + + + ++ V+h+++ fj15275 1098 GLMEVEFMSGTADE-DLVARVFRVQNISRLQ------EGHLLVRHFQFLR 1140 WPDh.gvPespkslldfvrlvrksqssspnssenivssnskyagtspsgP W +++P+s k++l+++ +v+k+q+ s++ g fj15275 1141 WSAYrDTPDSKKAFLHLLAEVDKWQAESGD------------------GR 1172 ivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQT ++VHC +G GR+GTF+a ++l+++++++ vd+f k+lR++ p+mV+T fj15275 1173 TIVHCLNGGGRSGTFCACATVLEMIRChnlVDVFFAAKTLRNYKPNMVET 1222 eeQYiFlyraileylk<-* +QY+F+y+++leyl+ fj15275 1223 MDQYHFCYDVALEYLE 1238 SM00404: domain 2 of 2, from 1132 to 1235: score 93.3, E = 2.9e-23 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk........Piv v+h++++ W + +P++++++l++l++v k + +++++ ++ fj15275 1132 LVRHFQFLRWSAY----RDTPDskKAFLHLLAEVDKwqaesgdgRTI 1174 VHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqtee VHC +G GR+Gtf+a ++l++ + ++ vd+f k lR+++p+mv+t + fj15275 1175 VHCLNGGGRSGTFCACATVLEMirchnlVDVFFAAKTLRNYKPNMVETMD 1224 QYlFlyralle<-* QY F+y++ le fj15275 1225 QYHFCYDVALE 1235 //