hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16233533/chunk_1/iprscan-20080810-16233533.nocrc
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Query sequence: fj15283
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.fs Helix-loop-helix DNA-binding domain             49.7    1.2e-12   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             51.7    2.3e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1     606   659 ..     1    53 []    49.7  1.2e-12
PF00010.16.ls   1/1     606   659 ..     1    53 []    51.7  2.3e-12

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 606 to 659: score 49.7, E = 1.2e-12
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskK.lsKaeiLrlAv
                      rR+a narER R+++iN+af eL ++   +++s+K+ +K+ iL +Av
     fj15283   606    RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKpQTKLLILHQAV 652  

                   eYIksLq<-*
                     I sL+   
     fj15283   653 AVILSLE    659  

PF00010.16.ls: domain 1 of 1, from 606 to 659: score 51.7, E = 2.3e-12
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskK.lsKaeiLrlAv
                      rR+a narER R+++iN+af eL ++   +++s+K+ +K+ iL +Av
     fj15283   606    RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKpQTKLLILHQAV 652  

                   eYIksLq<-*
                     I sL+   
     fj15283   653 AVILSLE    659  

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