hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16233533/chunk_1/iprscan-20080810-16233533.nocrc
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Query sequence: fj15283
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00353                                                  48.5    9.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00353    1/1     611   664 ..     1    61 []    48.5  9.1e-10

Alignments of top-scoring domains:
SM00353: domain 1 of 1, from 611 to 664: score 48.5, E = 9.1e-10
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                      narER   R+++iNe af+eL ++   +     + k  +K+ iL  A
     fj15283   611    NARER--LRVRDINE-AFKELGRMCQLHL---KSEKPQTKLLILHQA 651  

                   ieYIrksLqeqlqe<-*
                   +  I  sL++q++e   
     fj15283   652 VAVI-LSLEQQVRE    664  

//