hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16302797/chunk_1/iprscan-20080810-16302797.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj15288
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    204.0    7.1e-68   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    124.9    2.1e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      65   242 ..     1   184 [.   204.0  7.1e-68
PF00001.12.ls   1/1      65   261 ..     1   272 []   124.9  2.1e-34

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 65 to 242: score 204.0, E = 7.1e-68
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GNl  i++il++k +r++tni+i+NL+++DLL+++ ++p++++y ++
     fj15288    65    GNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLM 111  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +W+fG+a+Ckl  ++++v+ ++Si++L++I+++R++ I++P  +r  +
     fj15288   112 -DHWVFGEAMCKLNPFVQCVSITVSIFSLVLIAVERHQLIINPRGWRPNN 160  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngv....vnvttCl
                   +   +A+v i+++Wvla++ slP+l+++ ++++++ n++ +  +++++C+
     fj15288   161 R---HAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQNVTldayKDKYVCF 207  

                   idfpevstasvktwlvsyallstlvgFvlPllvilvcYtrI<-*
                     fp++s      +++sy++l++++ ++ Pl++i +cY+ +   
     fj15288   208 DQFPSDS------HRLSYTTLLLVLQYFGPLCFIFICYFKV    242  

PF00001.12.ls: domain 1 of 1, from 65 to 261: score 124.9, E = 2.1e-34
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GNl  i++il++k +r++tni+i+NL+++DLL+++ ++p++++y ++
     fj15288    65    GNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLM 111  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +W+fG+a+Ckl  ++++v+ ++Si++L++I+++R++ I++P  +r  +
     fj15288   112 -DHWVFGEAMCKLNPFVQCVSITVSIFSLVLIAVERHQLIINPRGWRPNN 160  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngv....vnvttCl
                   +   +A+v i+++Wvla++ slP+l+++ ++++++ n++ +  +++++C+
     fj15288   161 R---HAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQNVTldayKDKYVCF 207  

                   idfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrar
                     fp++s      +++sy++l++++ ++ Pl++i +cY+ + +  + +  
     fj15288   208 DQFPSDS------HRLSYTTLLLVLQYFGPLCFIFICYFKVRKLFFYHFH 251  

                   kgaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimss
                                                       ++  + ++ i    
     fj15288   252 ------------------------------------FYLLYTeFLI---- 261  

                   sCelervlptallvtlwLayvNsclNPiIY<-*
                                                    
     fj15288     - ------------------------------    -    

//