hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16424684/chunk_1/iprscan-20080810-16424684.nocrc
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Query sequence: fj15684
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00856.18.ls SET domain                                     118.1    2.3e-32   1
PF00856.18.fs SET domain                                     116.7    3.4e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00856.18.fs   1/1     216   346 ..     1   259 []   116.7  3.4e-32
PF00856.18.ls   1/1     216   346 ..     1   259 []   118.1  2.3e-32

Alignments of top-scoring domains:
PF00856.18.fs: domain 1 of 1, from 216 to 346: score 116.7, E = 3.4e-32
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+  +l +   + + +   lra++d++ +++iiEY+G+++ ++++e
     fj15684   216    SQMQLQLGRVTRVQK-HRKILRAARDLALDTLIIEYRGKVMLRQQFE 261  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                    ++           +  k++  Y f l +                     
     fj15684   262 VNG-----------HFFKKP--YPFVLFY--------------------- 277  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
     fj15684     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                 S ++ +               e+++DA+  GN aRF
     fj15684   278 --------------SKFNGV---------------EMCVDARTFGNDARF 298  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                   i++SC+PN+ev++++ d              g ++++++A   I ++ E+
     fj15684   299 IRRSCTPNAEVRHMIAD--------------GMIHLCIYAVSAITKDAEV 334  

                   tydYgydksnge<-*
                   t+ ++y++sn++   
     fj15684   335 TIAFDYEYSNCN    346  

PF00856.18.ls: domain 1 of 1, from 216 to 346: score 118.1, E = 2.3e-32
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+  +l +   + + +   lra++d++ +++iiEY+G+++ ++++e
     fj15684   216    SQMQLQLGRVTRVQK-HRKILRAARDLALDTLIIEYRGKVMLRQQFE 261  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                    ++           +  k++  Y f l +                     
     fj15684   262 VNG-----------HFFKKP--YPFVLFY--------------------- 277  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
     fj15684     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                 S ++ +               e+++DA+  GN aRF
     fj15684   278 --------------SKFNGV---------------EMCVDARTFGNDARF 298  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                   i++SC+PN+ev++++ d              g ++++++A   I ++ E+
     fj15684   299 IRRSCTPNAEVRHMIAD--------------GMIHLCIYAVSAITKDAEV 334  

                   tydYgydksnge<-*
                   t+ ++y++sn++   
     fj15684   335 TIAFDYEYSNCN    346  

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